View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0595_low_7 (Length: 397)

Name: NF0595_low_7
Description: NF0595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0595_low_7
NF0595_low_7
[»] chr1 (1 HSPs)
chr1 (7-386)||(1586379-1586758)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 1586379 - 1586758
Alignment:
Q  7 gttttgactaaaaaacgtggttctaaataaatacattttcaaagtgtagtgaaatatagacaaatttcatctttatatggacacacagacagaacaacag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586379 gttttgactaaaaaacgtggttctaaataaatacattttcaaagtgtagtgaaatatagacaaatttcatctttatatggacacacagacagaacaacag 1586478  T
Q  107 gataaaataaaaaacttagttattgttttattttatttctttcaaatcaaaggaacaatctttcacgaaattattgatggggccaaagccaaaaagaaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586479 gataaaataaaaaacttagttattgttttattttatttctttcaaatcaaaggaacaatctttcacgaaattattgatggggccaaagccaaaaagaaaa 1586578  T
Q  207 tccaattctgtgagcctaatggctgaggttttcgttttcacaaagtttagattctacaagaagcacatggcaaccaaggctaaactagtgtggtcagtga 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586579 tccaattctgtgaggctaatggctgaggttttcgttttcacaaagtttagattctacaagaagcacatggcaaccaaggctaaactagtgtggtcagtga 1586678  T
Q  307 ccactacctttcacaatcaacctcacgtgaactccatctcctctcttccagttttgtaatccttaacatcgtacattcat 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586679 ccactacctttcacaatcaacctcacgtgaactccatctcctctcttccagttttgtaatccttaacatcgtacattcat 1586758  T

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