View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0596_low_11 (Length: 251)
Name: NF0596_low_11
Description: NF0596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0596_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 54867294 - 54867411
Alignment:
| Q |
114 |
atcatggctgaggagaatcagaacaaatacgaggaaaccacagcaaccaactctgaga---------tcaaagacaggggtgtttttgatttcctaggtg |
204 |
Q |
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| T |
54867294 |
atcatggctgaggagaatcagaacaagtacgaggaaactacagcaaccaactctgagacgacagagatcaaagacaggggtgtttttgatttcctaggtg |
54867393 |
T |
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| Q |
205 |
gtaagaaaaaggatgaag |
222 |
Q |
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|||||||||||||||||| |
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| T |
54867394 |
gtaagaaaaaggatgaag |
54867411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 54867240 - 54867295
Alignment:
| Q |
27 |
actatcattcatcatactttacctttcgcatttccagctacataagaattaataat |
82 |
Q |
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|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
54867240 |
actatcattcataatactttacctttcgaatttccaactacataagaattaataat |
54867295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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