View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0596_low_2 (Length: 503)
Name: NF0596_low_2
Description: NF0596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0596_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 4236381 - 4236867
Alignment:
| Q |
1 |
cattatcacctgtcatcagagataaagttagttaatagtcaattaagaattagtta---------ttcttattatcttcttcgtattcatatagactcgt |
91 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||| || |||||| || |||||| |||||||||| ||| || | | ||||||| ||||| |
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| T |
4236381 |
cattgtcacctgtcatcagagataaagtatgttaatggttaattaacaactagttaggttaactattcttattatattcatcatttccatataggctcgt |
4236480 |
T |
|
| Q |
92 |
atgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236481 |
atgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaag |
4236580 |
T |
|
| Q |
192 |
cttccactgccgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatc |
291 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236581 |
cttccactgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatc |
4236680 |
T |
|
| Q |
292 |
tccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236681 |
tccttcaacttcaagctcttcgtctgtaacttttgtatacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttc |
4236780 |
T |
|
| Q |
392 |
aacatggtttcattgtcaagatctttcgaaattccaaaacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
4236781 |
aacatggtttcattgtcaagatctttcgaaattccaaaaccatcatggtattttgaacacattcttagtaccatctctgctgctcct |
4236867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
117 |
atcaagttatcgataaataagatattttagtaatacctgt |
156 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
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| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
118 |
tcaagttatcgataaataagatattttagtaatacctgt |
156 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||| |
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| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 129 - 478
Target Start/End: Original strand, 6185611 - 6185960
Alignment:
| Q |
129 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatc |
228 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
|
| Q |
229 |
cttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgta |
328 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| | | ||||||||| | | |||| |||||||| |||| |||| |
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| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgta |
6185810 |
T |
|
| Q |
329 |
tacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaa |
428 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |||||||| |
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| T |
6185811 |
cacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttcagcatagattcattgtcaagatctttcaaaattccat |
6185910 |
T |
|
| Q |
429 |
aacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
478 |
Q |
| |
|
||| ||||| |||| |||| |||||||||||||||||||| ||| ||||| |
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|
| T |
6185911 |
aaccatcatagtatcttgaacacattcttagtaccatctcggctgctcct |
6185960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 21847622 - 21847718
Alignment:
| Q |
382 |
ttcgaatttcaacatggtttcattgtcaagatctttcgaaattccaaaacgatcatggtattttgagcacattcttagtaccatctctgctcctcct |
478 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||| |||||||| | | | | ||| |||| |||||||||||||||||||||||| ||||| |
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| T |
21847622 |
ttcgaatttcaacatagatccattgtcaagatctttcaaaattccacagccaatgtaatatcttgaacacattcttagtaccatctctgcttctcct |
21847718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
117 |
atcaagttatcgataaataagatattttagtaatacctgt |
156 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
43 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
105 |
Q |
| |
|
||||||||||||||| ||| ||||| | ||| | ||||||| ||||| ||||||||||||||| |
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|
| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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