View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0596_low_4 (Length: 342)

Name: NF0596_low_4
Description: NF0596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0596_low_4
NF0596_low_4
[»] chr4 (4 HSPs)
chr4 (75-341)||(7458151-7458417)
chr4 (75-341)||(7412072-7412339)
chr4 (78-152)||(13031387-13031461)
chr4 (78-156)||(7419361-7419439)
[»] scaffold0105 (5 HSPs)
scaffold0105 (85-341)||(3433-3689)
scaffold0105 (85-341)||(15580-15836)
scaffold0105 (85-341)||(35403-35659)
scaffold0105 (85-341)||(49003-49259)
scaffold0105 (85-341)||(9515-9771)
[»] scaffold0345 (1 HSPs)
scaffold0345 (85-341)||(3320-3576)
[»] scaffold1330 (1 HSPs)
scaffold1330 (146-341)||(1802-1997)
[»] scaffold0496 (1 HSPs)
scaffold0496 (218-341)||(3000-3123)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 75 - 341
Target Start/End: Complemental strand, 7458417 - 7458151
Alignment:
Q  75 cagagaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttggg 174  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7458417 cagagaacatcatcaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttggg 7458318  T
Q  175 acccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7458317 acccaagcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacctt 7458218  T
Q  275 tcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7458217 tcattgaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatactt 7458151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 75 - 341
Target Start/End: Complemental strand, 7412339 - 7412072
Alignment:
Q  75 cagagaacatcatcaa-catcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgg 173  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7412339 cagagaacatcatcaaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttgg 7412240  T
Q  174 gacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacct 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  7412239 gacccaagcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacct 7412140  T
Q  274 ttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7412139 ttcattgaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatactt 7412072  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 13031461 - 13031387
Alignment:
Q  78 agaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattcca 152  Q
    |||||| |||||||||||||||||| ||||  ||| |||||||||||||  || |||||||||||||||||||||    
T  13031461 agaacaacatcaacatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagttgattcca 13031387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 7419361 - 7419439
Alignment:
Q  78 agaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgt 156  Q
    |||||| |||||| ||||||||||| ||||  ||| |||||||||||||  || |||||||||||| ||||||||||||    
T  7419361 agaacaacatcaatatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagctgattccattgt 7419439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 85 - 341
Target Start/End: Original strand, 3433 - 3689
Alignment:
Q  85 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 184  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  3433 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 3532  T
Q  185 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 284  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  3533 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 3632  T
Q  285 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  3633 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 3689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 85 - 341
Target Start/End: Original strand, 15580 - 15836
Alignment:
Q  85 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 184  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  15580 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 15679  T
Q  185 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 284  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  15680 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 15779  T
Q  285 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  15780 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 15836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 85 - 341
Target Start/End: Complemental strand, 35659 - 35403
Alignment:
Q  85 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 184  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  35659 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 35560  T
Q  185 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 284  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  35559 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 35460  T
Q  285 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  35459 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 35403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 85 - 341
Target Start/End: Complemental strand, 49259 - 49003
Alignment:
Q  85 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 184  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  49259 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 49160  T
Q  185 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 284  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  49159 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 49060  T
Q  285 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  49059 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 49003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 341
Target Start/End: Original strand, 9515 - 9771
Alignment:
Q  85 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 184  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  9515 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 9614  T
Q  185 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 284  Q
    ||||||||| |||   |  || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  9615 tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 9714  T
Q  285 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  9715 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 9771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 85 - 341
Target Start/End: Original strand, 3320 - 3576
Alignment:
Q  85 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 184  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  3320 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 3419  T
Q  185 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 284  Q
    ||||||||| |||   |  || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  3420 tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 3519  T
Q  285 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  3520 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 3576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1330 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 341
Target Start/End: Complemental strand, 1997 - 1802
Alignment:
Q  146 gattccattgtatcgctctttcatttgggacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctcc 245  Q
    |||||||||||  | ||| ||||||||||| ||||||||||||||||| |||   |  || ||||| ||  |||||||| ||||| | |||   ||||||    
T  1997 gattccattgtggctctccttcatttgggatccaagcattgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctcc 1898  T
Q  246 acatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactt 341  Q
     ||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| ||||||    
T  1897 gcatgctcgaaaggctaatccccaaccattcatcgaagtagcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatactt 1802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 3123 - 3000
Alignment:
Q  218 gacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaaccca 317  Q
    ||||||| ||||| | |||  ||||||||||||  ||||| |||| ||||||||| ||||  || || |||||||||||||| ||||||||| | |||||    
T  3123 gacctccaagaaataatagtttatctccacatgatcgaaatgctagtccccaaccattcaccgatgtagcttgctcaggaaagcttccaatgatgaccca 3024  T
Q  318 agagttattgtttttattatactt 341  Q
    | |||| |||| ||||| ||||||    
T  3023 atagttgttgtctttatcatactt 3000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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