View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0596_low_9 (Length: 260)
Name: NF0596_low_9
Description: NF0596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0596_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 22987354 - 22987273
Alignment:
| Q |
170 |
ttgccactccttcttatttcactgtattatagtataatacctccttttgtttttaataattgcattattatagtgctactat |
251 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22987354 |
ttgccaccccttcttatttcattgtattatagtataatacctccttttgtttttaataattgcattattatagtgctactat |
22987273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 37779620 - 37779701
Alignment:
| Q |
170 |
ttgccactccttcttatttcactgtattatagtataatacctccttttgtttttaataattgcattattatagtgctactat |
251 |
Q |
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||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37779620 |
ttgccaccccttcttatttcattatattatagtataatacctccttttgtttttaataattgcattattatagtgctactat |
37779701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 37902658 - 37902611
Alignment:
| Q |
172 |
gccactccttcttatttcactgtattatagtataatacctccttttgt |
219 |
Q |
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||||| |||||||||||||||||||||||||||| || |||||||||| |
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| T |
37902658 |
gccaccccttcttatttcactgtattatagtatagtatctccttttgt |
37902611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 32209732 - 32209813
Alignment:
| Q |
170 |
ttgccactccttcttatttcactgtattatagtataatacctccttttgtttttaataattgcattattatagtgctactat |
251 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32209732 |
ttgccaccgcttcttatttcattgtattatagtataatacctccttttgtttttaataattgcattattatagtgctactat |
32209813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 28843073 - 28843120
Alignment:
| Q |
172 |
gccactccttcttatttcactgtattatagtataatacctccttttgt |
219 |
Q |
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|
||||| |||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
28843073 |
gccaccccttcttatttcactgtattatagtatagtatctccttttgt |
28843120 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 39071892 - 39071851
Alignment:
| Q |
178 |
ccttcttatttcactgtattatagtataatacctccttttgt |
219 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39071892 |
ccttcttatttcactgtattatagtatagtacctccttttgt |
39071851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 43266497 - 43266450
Alignment:
| Q |
172 |
gccactccttcttatttcactgtattatagtataatacctccttttgt |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
43266497 |
gccaccccttcttatttcactgtattatagtatagtatctccttttgt |
43266450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 3743076 - 3743029
Alignment:
| Q |
172 |
gccactccttcttatttcactgtattatagtataatacctccttttgt |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||| |||||| |
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| T |
3743076 |
gccaccccttcttatttcactgtattatagtatagtatctcattttgt |
3743029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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