View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598-INSERTION-1 (Length: 276)

Name: NF0598-INSERTION-1
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598-INSERTION-1
NF0598-INSERTION-1
[»] chr4 (17 HSPs)
chr4 (8-276)||(48872633-48872902)
chr4 (8-276)||(48877937-48878206)
chr4 (11-259)||(48865592-48865840)
chr4 (76-241)||(45346718-45346889)
chr4 (128-249)||(45364060-45364183)
chr4 (128-249)||(45375300-45375423)
chr4 (128-249)||(45382879-45383002)
chr4 (8-253)||(48842613-48842866)
chr4 (17-191)||(48856168-48856345)
chr4 (76-241)||(45342243-45342415)
chr4 (11-72)||(45354050-45354111)
chr4 (11-72)||(45356611-45356672)
chr4 (11-72)||(45363529-45363590)
chr4 (11-72)||(45370352-45370413)
chr4 (11-72)||(45382348-45382409)
chr4 (118-187)||(45342165-45342236)
chr4 (13-108)||(48900010-48900106)
[»] chr3 (3 HSPs)
chr3 (118-253)||(11014016-11014152)
chr3 (128-253)||(11023339-11023465)
chr3 (171-253)||(11004575-11004658)
[»] chr8 (1 HSPs)
chr8 (159-253)||(35648301-35648394)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 48872902 - 48872633
Alignment:
Q  8 aagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttacaca 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48872902 aagataacttcacagcatacagaatatgtataaaagaaacaccaatcaaacaagctatatatgaatacaagcacaagagtatatttttctcatttacaca 48872803  T
Q  108 aattataattaattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttagg 206  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48872802 aattataattaattgtctagttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttagg 48872703  T
Q  207 tggaaaacacatgaaaagtttttatattatatctctaacaaaaccccaagtactgcagtctacagccttt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  48872702 tggaaaacacatgaaaagtttttatattatatctctaacaaaacgccaagtactacagtctacagccttt 48872633  T

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Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 48878206 - 48877937
Alignment:
Q  8 aagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttacaca 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48878206 aagataacttcacagcatacagaatatgtataaaagaaacaccaatcaaacaagctatatatgaatacaagcacaagagtatatttttctcatttacaca 48878107  T
Q  108 aattataattaattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttagg 206  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48878106 aattataattaattgtctagttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttagg 48878007  T
Q  207 tggaaaacacatgaaaagtttttatattatatctctaacaaaaccccaagtactgcagtctacagccttt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  48878006 tggaaaacacatgaaaagtttttatattatatctctaacaaaacgccaagtactacagtctacagccttt 48877937  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 48865840 - 48865592
Alignment:
Q  11 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttacacaaat 110  Q
    ||||||||||| || ||| | |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| ||||||| |||||||||||||||||||    
T  48865840 ataacttcacaacacacaaagtatgtataaaagaaacacaaatcaaacaac-tatatatgaatccaagtacaggagtataattttctcatttacacaaat 48865742  T
Q  111 tataa-ttaattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttaggtg 208  Q
    ||||| | || ||||||||||  |||||||| || ||||||||||| | |||||||| ||||||||| ||| |||||||||| ||||  ||||||| |      
T  48865741 tataactaaactgtctagtttagtagctgtccaaacaaactcagcttagatgaactttgtcgtgaatgatccattcaaaaagcttgagctattttaaggt 48865642  T
Q  209 gaaaacacatgaaaagtttttatattatatctc-taacaaaaccccaagtac 259  Q
    |||||||||  || ||||||||||||||| ||| ||||||||||||||||||    
T  48865641 gaaaacaca--aacagtttttatattatacctcttaacaaaaccccaagtac 48865592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 45346718 - 45346889
Alignment:
Q  76 aagcacaagagtatatttttctcatttacacaaattat----aattaa-ttgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtc 170  Q
    ||||||| ||||||| |||||||||||||| || || |    |||||| ||||||| ||||||||||||| |||| ||||||||||| |||| ||| |||    
T  45346718 aagcacatgagtataattttctcatttacataatttttttttaattaaattgtctatttttttagctgtccaagcgaactcagctcagatgagctttgtc 45346817  T
Q  171 gtgaatcatcgattcaaaaaggttga-ttattttaggtggaaaacacatgaaaagtttttatattatatctc 241  Q
    |||||||||| |||||||||| ||||  |||| |||||||||||||| | ||  ||||||||||||||||||    
T  45346818 gtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatattatatctc 45346889  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 45364060 - 45364183
Alignment:
Q  128 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga--ttattttaggtggaaaacacatgaaaagt 225  Q
    ||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |||||||||| ||||  |  || ||||| ||||||| ||||| |||    
T  45364060 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45364159  T
Q  226 ttttatattatatctctaacaaaa 249  Q
    ||||||||||||||||||||||||    
T  45364160 ttttatattatatctctaacaaaa 45364183  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 45375300 - 45375423
Alignment:
Q  128 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga--ttattttaggtggaaaacacatgaaaagt 225  Q
    ||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |||||||||| ||||  |  || ||||| ||||||| ||||| |||    
T  45375300 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45375399  T
Q  226 ttttatattatatctctaacaaaa 249  Q
    ||||||||||||||||||||||||    
T  45375400 ttttatattatatctctaacaaaa 45375423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 45382879 - 45383002
Alignment:
Q  128 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga--ttattttaggtggaaaacacatgaaaagt 225  Q
    ||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |||||||||| ||||  |  || ||||| ||||||| ||||| |||    
T  45382879 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45382978  T
Q  226 ttttatattatatctctaacaaaa 249  Q
    ||||||||||||||||||||||||    
T  45382979 ttttatattatatctctaacaaaa 45383002  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 48842613 - 48842866
Alignment:
Q  8 aagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatat--gaatacaagcacaagagtatatttttctcattt--a 103  Q
    |||||||||||||| || |||||||| | || ||||||| || ||||||||||  |||||||  |||  |||| | | || |||| |||||||| ||  |    
T  48842613 aagataacttcacaacacacagaatacggatgaaagaaagacaaatcaaacaagttatatatatgaagccaagaaaaggaatatacttttctcacttgta 48842712  T
Q  104 cacaaattataatta-attgtctagtttttt-agctgtcaaagcaaa-ctcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgat-ta 199  Q
    || |||||||||||| ||| |||| |||||| ||| ||| | ||||| ||||| ||| |||||||| || |||||||||| || |||||| ||| |  ||    
T  48842713 caaaaattataattagattatctactttttttagccgtccatgcaaatctcagatcagatgaactttgttgtgaatcatcaatccaaaaaagttaagcta 48842812  T
Q  200 ttttaggtggaaaacacatgaaaagtttttatattatatctctaacaaaacccc 253  Q
    ||||||  |||||||||||||| ||||||||||||||||||||||| |||||||    
T  48842813 ttttagacggaaaacacatgaacagtttttatattatatctctaactaaacccc 48842866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 48856345 - 48856168
Alignment:
Q  17 tcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatt--tacacaaattata 114  Q
    ||||| || ||||||||| |||||||||||||| |||||||||| |||||||  ||  |||||| | || |||| ||||||||||  |||| ||||||||    
T  48856345 tcacaacacacagaatatatataaaagaaacacaaatcaaacaagctatatacaaagccaagcataggaatataattttctcatttatacaaaaattata 48856246  T
Q  115 att-aattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaag 191  Q
    ||| |||| || | | | |||| |||| || |||||| |||||||||||| || ||||||||||||| ||||||||||    
T  48856245 attaaattttcgattctattagttgtccaaccaaacttagctcaaatgaattttgtcgtgaatcatcaattcaaaaag 48856168  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 241
Target Start/End: Original strand, 45342243 - 45342415
Alignment:
Q  76 aagcacaagagtatatttttctcatttacacaaattat---aattaa-ttgtctag--ttttttagctgtcaaagcaaactcagctcaaatgaacttggt 169  Q
    ||||||| ||||||| |||||||||||||| || || |   |||||| |||||||   ||||||||||||| |||| ||||||||||| |||| ||| ||    
T  45342243 aagcacatgagtataattttctcatttacataattttttttaattaaattgtctatatttttttagctgtccaagcgaactcagctcagatgagctttgt 45342342  T
Q  170 cgtgaatcatcgattcaaaaaggttga-ttattttaggtggaaaacacatgaaaagtttttatattatatctc 241  Q
    ||||||||||| |||||||||| ||||  |||| |||||||||||||| | ||  |||| |||| ||||||||    
T  45342343 cgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttctatagtatatctc 45342415  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45354050 - 45354111
Alignment:
Q  11 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 72  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45354050 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45354111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45356611 - 45356672
Alignment:
Q  11 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 72  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45356611 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45356672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45363529 - 45363590
Alignment:
Q  11 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 72  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45363529 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45363590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45370352 - 45370413
Alignment:
Q  11 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 72  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45370352 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45370413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 45382348 - 45382409
Alignment:
Q  11 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 72  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45382348 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45382409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 45342165 - 45342236
Alignment:
Q  118 aattgtctagttttttagctgtcaaagcaaac--tcagctcaaatgaacttggtcgtgaatcatcgattcaa 187  Q
    ||||| ||| |||||| |||||||||||||||  ||| |||| |||||||| ||| ||||||||| ||||||    
T  45342165 aattgcctaattttttggctgtcaaagcaaactttcaactcagatgaactttgtcttgaatcatcaattcaa 45342236  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 48900106 - 48900010
Alignment:
Q  13 aacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtat-atttttctcatttacacaa 108  Q
    ||||||||| || ||  ||||||||||||||||||||  ||||||||| ||||| |||||  | |||| | |||||| |||||| ||||||| ||||    
T  48900106 aacttcacaacacacgaaatatgtataaaagaaacacagatcaaacaagctatacatgaagccgagcataggagtataatttttatcatttatacaa 48900010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 11014016 - 11014152
Alignment:
Q  118 aattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgat-tattttaggtggaaaacac 216  Q
    |||||| || |||||||| |||| |||||||||||||||| |||||||| ||   |||||||| |||||||||| || |  |||||||||||||||| ||    
T  11014016 aattgtgtatttttttagatgtccaagcaaactcagctcagatgaactttgttaggaatcatcaattcaaaaagcttaagctattttaggtggaaaatac 11014115  T
Q  217 atgaaaagtttttatattatatctctaacaaaacccc 253  Q
    ||||| ||||||||||| |||||| ||||| ||||||    
T  11014116 atgaatagtttttatatcatatctttaacataacccc 11014152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 253
Target Start/End: Original strand, 11023339 - 11023465
Alignment:
Q  128 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttaggtggaaaacacatgaaaagtt 226  Q
    |||||||| ||| ||||||||||||||||| |||||||| || |||||||||| |||| ||||| || |  |||||||||||||||  ||||||| ||||    
T  11023339 ttttttagatgttaaagcaaactcagctcagatgaactttgttgtgaatcatcaattccaaaagctttagctattttaggtggaaagtacatgaatagtt 11023438  T
Q  227 tttatattatatctctaacaaaacccc 253  Q
    ||||||| |||||| ||||| ||||||    
T  11023439 tttatatcatatctttaacataacccc 11023465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 11004575 - 11004658
Alignment:
Q  171 gtgaatcatcgattcaaaaaggttgat-tattttaggtggaaaacacatgaaaagtttttatattatatctctaacaaaacccc 253  Q
    |||||||||| |||||||||| || |  | |||||||||||||| ||||||| ||||||||||| |||||| ||||| ||||||    
T  11004575 gtgaatcatcaattcaaaaagctttagcttttttaggtggaaaatacatgaatagtttttatatcatatctttaacataacccc 11004658  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 35648301 - 35648394
Alignment:
Q  159 atgaacttggtcgtgaatcatcgattcaaaaaggttgattattttaggtggaaaacacatgaaaagtttttatattatatctctaacaaaacccc 253  Q
    |||||||| |||||| |||||| |||||||| | | |  | |||||| |||||||| ||||||  |||||||||||||||||||||| |||||||    
T  35648301 atgaactttgtcgtgtatcatcaattcaaaa-gttaggatgttttagatggaaaactcatgaacggtttttatattatatctctaactaaacccc 35648394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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