View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598-INSERTION-10 (Length: 707)
Name: NF0598-INSERTION-10
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598-INSERTION-10 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 242 - 592
Target Start/End: Complemental strand, 43914846 - 43914494
Alignment:
| Q |
242 |
aattgaaattaggggtaacgggaaattttcaactatctataaattgttcttatataattagatgatttcactttaattctatctgcgatgaatata---- |
337 |
Q |
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| T |
43914846 |
aattgaaattaggagtaacgggaaattttcaactatctataaattgttcttatataattagatgatttcactttaattctatctgcgatgaatataaata |
43914747 |
T |
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| Q |
338 |
---caaaaccttgtgagttgtgaatgagctagaatgtagacaccagatttcattgggtaaggatgctttccagcatgaagttgattgacaccactagtca |
434 |
Q |
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| T |
43914746 |
ctacaaaaccttgtgagttgtgaacgagcta-----tagacaccagatttcattgggtaaggatgctttccagcatgaagttgattgacagcactagtca |
43914652 |
T |
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| Q |
435 |
cactgatttggatacaaagtgccaacactggccaagttttttcaatgtaccagaatatcaaacctagatcatcaaggttgacgagcaatttgacactacc |
534 |
Q |
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| T |
43914651 |
cactgatttggattcaaagtgccaacactggccaagttttttcaatgtaccagaatatcaaacctagatcatcaaggttgacgagcaagttgacactacc |
43914552 |
T |
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| Q |
535 |
taactgcttgacctttgtactacaaatatcagcgaaaaagttttgattattttcaaca |
592 |
Q |
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| T |
43914551 |
taactgcttgacctttgtactacaaatatcagcgaaaaagttttgattattttcaaca |
43914494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 43915111 - 43914868
Alignment:
| Q |
8 |
cagatgactaaaatacgtttaaaattaaataatttatcagctgtattcaaagtcacaacctttgcaaattgagtttatgtaatctacaatgcatatgtaa |
107 |
Q |
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| T |
43915111 |
cagatgactaaaatacgtttaaaattaaataatttatcagttgtattcaaagtcacaacctttgcaaattgagtttatgtaatctacaatgcatatgtaa |
43915012 |
T |
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| Q |
108 |
gttgagtttacatattcgtatgtaaattgagttttttatatagcatgcttaccattgctcacgtaaactcatttatgtaattttttaaaatatgaatttt |
207 |
Q |
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| T |
43915011 |
gttgagtttacatattcgtatgtaaattgagttttttatatagcatgcttaacattgctcacgtaaactcatttatgtaattttttaaaatatgaatttt |
43914912 |
T |
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| Q |
208 |
aagacgtatgcaaacttagattgcgtacatatacaattgaaatt |
251 |
Q |
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| T |
43914911 |
aagacgtatgcaaacttagattgcgtacatatacaattgcaatt |
43914868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 631 - 707
Target Start/End: Complemental strand, 43914493 - 43914417
Alignment:
| Q |
631 |
gtgtaaagctaaacataataccaagaataagaaactcattatagnnnnnnnnattaataattcttttttaaattcaa |
707 |
Q |
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| T |
43914493 |
gtgtaaagctaaacataataccaagaataagaaactcattatagttttttttattaataattcttttttaaattcaa |
43914417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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