View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598-INSERTION-11 (Length: 194)
Name: NF0598-INSERTION-11
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598-INSERTION-11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 3e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 8368265 - 8368451
Alignment:
| Q |
8 |
taatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaataca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368265 |
taatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaataca |
8368364 |
T |
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| Q |
108 |
tcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttcta |
194 |
Q |
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| T |
8368365 |
tcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttcta |
8368451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 8401145 - 8400959
Alignment:
| Q |
8 |
taatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaataca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401145 |
taatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaataca |
8401046 |
T |
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| Q |
108 |
tcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttcta |
194 |
Q |
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| T |
8401045 |
tcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttcta |
8400959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 8422722 - 8422536
Alignment:
| Q |
8 |
taatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaataca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422722 |
taatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaataca |
8422623 |
T |
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| Q |
108 |
tcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttcta |
194 |
Q |
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| T |
8422622 |
tcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttcta |
8422536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 8403987 - 8404023
Alignment:
| Q |
57 |
cctaatctctcataatcttccatatcttttctcttca |
93 |
Q |
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||||||||||||||||| || |||||||||||||||| |
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| T |
8403987 |
cctaatctctcataatcctcaatatcttttctcttca |
8404023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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