View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598-INSERTION-12 (Length: 639)
Name: NF0598-INSERTION-12
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598-INSERTION-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 58 - 639
Target Start/End: Original strand, 4603151 - 4603732
Alignment:
| Q |
58 |
attctaacattagtttggatactggatccttaaacaagtgtctaaggacattgtttcacatgactctttctatgtaaaagttgggtgcatgcatgaccaa |
157 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4603151 |
attctaacattagtttggatactgaatccttaaacaagtgtctaagggcattgtttcacatgactctttctatgtaaaagttgggtgcatgcatgaccaa |
4603250 |
T |
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| Q |
158 |
tattccacgtttccaatttccaataccaatacacctcattttcttcatctacagaccaaacattcttggtaagcaaaaatcaaagttattcttactactt |
257 |
Q |
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| T |
4603251 |
tattccacgtttccaatttccaataccaatacacctcattttcttcatctacagaccaaacattcttggtaagcaaaaatcaaagttattcttactactt |
4603350 |
T |
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| Q |
258 |
gtttccctaccaaaagtcaagttgtggatagattctcatggtaactaacaactactaacaagaattgcttgcctcatattggtgaacgtaatcagtttaa |
357 |
Q |
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| T |
4603351 |
gtttccctaccaaaagtcaagttgtggatagattctcatggtaactaacaactactaacaagaattgcttgcctcatattggtgaacgtaatcagtttaa |
4603450 |
T |
|
| Q |
358 |
gtaactttttcaatatagtaacacaaatgcaccataccacggggagcacggtccnnnnnnnnngttagtgggttgttggatttgaatcctagccttcaca |
457 |
Q |
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| T |
4603451 |
gtaac-ttttcaatatagtaacacaaatgcaccataccacggggagcacggtccattttttttgttagtgggttgttggatttgaatccaagccttcaca |
4603549 |
T |
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| Q |
458 |
cttaggcttaagaagtttgttgttcccacttcagatttactatgaaacatcagaaaattacacatttatttttatcgatagttaactgtcgtcagattta |
557 |
Q |
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| T |
4603550 |
cttaggcttaagaagtttgttgttcccacttcagatttactatgaaacatcagaaaattaaacatttatttttatcgatagttaactaccgtcaaattta |
4603649 |
T |
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| Q |
558 |
tattnnnnnnnggt-catttcgacgattaactgtcgcggaaccaggaatttcgtcaattaactactgccaggtaagtttttaa |
639 |
Q |
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| T |
4603650 |
tattaaaaaaaggtacacttcgatggttaactgccgcggaataaggaatttcgtcaattaactaccgccacgtaagtttttaa |
4603732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 4602460 - 4602518
Alignment:
| Q |
7 |
ataaatcaatcaaataatggaaaagttgcgttccttaatccttactacctcattctaac |
65 |
Q |
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| T |
4602460 |
ataaatcaatcaaataatggaaaagttgcgttccttaatccttactacctcattctaac |
4602518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 559
Target Start/End: Complemental strand, 34824363 - 34824301
Alignment:
| Q |
497 |
ctatgaaacatcagaaaattacacatttatttttatcgatagttaactgtcgtcagatttata |
559 |
Q |
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| T |
34824363 |
ctatgaaacatcaaaaaattacacatttactctcatcgatagttaactgccgtcatatttata |
34824301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 619
Target Start/End: Complemental strand, 37436656 - 37436612
Alignment:
| Q |
575 |
ttcgacgattaactgtcgcggaaccaggaatttcgtcaattaact |
619 |
Q |
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| T |
37436656 |
ttcgacaattaactgtcgcggaacaaggaatttcgacaattaact |
37436612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 545
Target Start/End: Original strand, 2607170 - 2607218
Alignment:
| Q |
497 |
ctatgaaacatcagaaaattacacatttatttttatcgatagttaactg |
545 |
Q |
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| T |
2607170 |
ctatgaaacattaggaaattacacttttattttcatcggtagttaactg |
2607218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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