View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598-INSERTION-14 (Length: 669)
Name: NF0598-INSERTION-14
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598-INSERTION-14 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 669
Target Start/End: Complemental strand, 770240 - 769574
Alignment:
| Q |
8 |
aatgttatgttgtattgttc-aacagtttgatcagaggcaaaagtctatgggccttcctacaagcgaggagcttcagaaagaggaaataatgaagaaatt |
106 |
Q |
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| T |
770240 |
aatgttatgctgtattgttccaacagtttgatcagaggcaaaagtctatgggccttcctacaagcgaggagcttcagaaagaggaaatgatgaagaaatt |
770141 |
T |
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| Q |
107 |
tatgagccaggtgaaccattgatttttgtactcattttctttgtcttctcgttttctattgagggcctgtttggataaaacttgtgagattgtttggata |
206 |
Q |
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| T |
770140 |
tatgagccaggtgaaccattgatttttgtactcattttctttgtcttctcattttctattgagggcctgtttggataaaacttgtgagattgtttggata |
770041 |
T |
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| Q |
207 |
acaacttgtgacatatctataagcttcttaaacgctccatgataaccttctaaaagtacttatatataaatactttt-tatgataaatt-tttatcttaa |
304 |
Q |
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| T |
770040 |
acaacttgtgacatatctataagcttcttaaactctccatgatagccttctaaaagtacttatatataagtacttttataataaaaataatttatcttaa |
769941 |
T |
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| Q |
305 |
aagcccttaataaagttgcttatcaaaattttatgttttgcagcatcctaacatggacttctcgggtgcaaagttttagtagaaagatgctatgattttg |
404 |
Q |
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| T |
769940 |
aagctcttaattaagtcacttatctaaattttatgttttgcagcatcctaacatggacttctcgggtgcaaagttttagtagaacggtgctatgattttg |
769841 |
T |
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| Q |
405 |
tcgtgctcttttttgatttactacatacaaaagctatcttcaacgttgttgctgaaaatacttcatatatctcttttgaaatacctattgggataatctt |
504 |
Q |
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| T |
769840 |
tcatgctcttttttgatttactacatacacaagctatcttcaacgttggtgctgaaaatacttcatatatatcttttgaaatacctattgggataatctt |
769741 |
T |
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| Q |
505 |
--gtgtacatgtttcgacatagttgtagacttctagtaccatcctggtttatgttaggtgaaatcacattgcgttgaaagtattttagttttatatcatg |
602 |
Q |
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| T |
769740 |
ttgtgtacatgtttcgacatagttgtagacttctagtaccatcctggtttatgttaggtgaaatcacattgcgttgaaagtattttagttttatatcatg |
769641 |
T |
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| Q |
603 |
ctttgagtaacagtagaaaaagtttccattgaatcaaactatgttttatctattcctgcgtaaaaat |
669 |
Q |
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| T |
769640 |
ctttgagtaacagtagaaaaagtttccattgaatcaaactatgttttatctattcctgcgtaaaaat |
769574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 785909 - 786032
Alignment:
| Q |
9 |
atgttatgttgtattgttcaacagtttgatcagaggcaaaagtctatgggccttcctacaagcgaggagcttcagaaagaggaaataatgaagaaattta |
108 |
Q |
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| T |
785909 |
atgttatcttgtattatttaacagtttgatcagaggcagaagtctatgggccttcctacaagtgaggagctccagaaacaggaaatcatgaagaaattta |
786008 |
T |
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| Q |
109 |
tgagccaggtgaaccattgatttt |
132 |
Q |
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| T |
786009 |
tgagtcaggtaaacctttgatttt |
786032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 780981 - 781091
Alignment:
| Q |
8 |
aatgttatgttgtattgttcaacagtttgatcagaggcaaaagtctatgggccttcctacaagcgaggagcttcagaaagaggaaataatgaagaaattt |
107 |
Q |
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| T |
780981 |
aatgttatcttgtattgttcaacagtttgatcagagacagaagtctatgggccttcctacaagcgaggagctcgagaaacaggaaatgatgaagaaattt |
781080 |
T |
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| Q |
108 |
atgagccaggt |
118 |
Q |
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| T |
781081 |
atgagtcaggt |
781091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 781294 - 781338
Alignment:
| Q |
332 |
attttatgttttgcagcatcctaacatggacttctcgggtgcaaa |
376 |
Q |
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| T |
781294 |
attttatgttttgcagcatcctaacatggacttctctggtgcaaa |
781338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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