View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598-INSERTION-18 (Length: 758)

Name: NF0598-INSERTION-18
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598-INSERTION-18
NF0598-INSERTION-18
[»] chr3 (8 HSPs)
chr3 (256-477)||(49975157-49975380)
chr3 (7-199)||(49974905-49975097)
chr3 (534-706)||(49975437-49975606)
chr3 (705-758)||(49976589-49976642)
chr3 (7-101)||(8231806-8231900)
chr3 (614-686)||(26132071-26132144)
chr3 (614-671)||(36226888-36226945)
chr3 (614-671)||(34816685-34816742)
[»] chr4 (7 HSPs)
chr4 (9-118)||(23977570-23977680)
chr4 (601-669)||(45105560-45105628)
chr4 (612-670)||(24993269-24993327)
chr4 (621-671)||(30508776-30508826)
chr4 (612-671)||(44433998-44434057)
chr4 (614-671)||(36908430-36908487)
chr4 (614-686)||(37735016-37735089)
[»] chr1 (9 HSPs)
chr1 (606-671)||(19053797-19053862)
chr1 (621-670)||(11331010-11331059)
chr1 (621-670)||(11489031-11489080)
chr1 (614-670)||(1765554-1765610)
chr1 (613-669)||(21509317-21509373)
chr1 (602-688)||(34738716-34738803)
chr1 (613-688)||(25871449-25871523)
chr1 (628-686)||(25871552-25871611)
chr1 (614-671)||(24855174-24855231)
[»] chr5 (13 HSPs)
chr5 (602-669)||(36880039-36880107)
chr5 (624-686)||(25911176-25911239)
chr5 (602-669)||(29048573-29048640)
chr5 (612-670)||(20906324-20906382)
chr5 (612-669)||(4799606-4799663)
chr5 (612-669)||(17540899-17540956)
chr5 (635-686)||(9035313-9035365)
chr5 (613-669)||(10904846-10904902)
chr5 (612-647)||(20919605-20919640)
chr5 (629-671)||(35503537-35503579)
chr5 (7-101)||(42170154-42170247)
chr5 (614-671)||(9035403-9035460)
chr5 (612-669)||(32077946-32078003)
[»] chr8 (4 HSPs)
chr8 (612-671)||(43012741-43012800)
chr8 (613-688)||(13962617-13962693)
chr8 (612-688)||(34142737-34142814)
chr8 (627-668)||(32287557-32287598)
[»] chr7 (5 HSPs)
chr7 (25-118)||(17273246-17273337)
chr7 (612-670)||(5793805-5793863)
chr7 (613-671)||(28751210-28751268)
chr7 (602-650)||(26387635-26387684)
chr7 (602-646)||(37257613-37257658)
[»] chr6 (4 HSPs)
chr6 (605-671)||(26281058-26281125)
chr6 (602-669)||(6560214-6560282)
chr6 (602-664)||(32529336-32529399)
chr6 (614-671)||(19254992-19255049)
[»] chr2 (5 HSPs)
chr2 (602-647)||(37141246-37141292)
chr2 (612-649)||(10331995-10332032)
chr2 (614-686)||(19427771-19427844)
chr2 (634-686)||(27002550-27002603)
chr2 (614-671)||(42060983-42061040)
[»] scaffold0013 (1 HSPs)
scaffold0013 (612-649)||(25474-25511)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 256 - 477
Target Start/End: Original strand, 49975157 - 49975380
Alignment:
Q  256 ccaaggtaacgtgtgaacctcaaatcacccacaaccctatttgcttcaacctctctatttcaacctccacgacccccctccatcaaccaaccagccctcc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49975157 ccaaggtaacgtgtgaacctcaaatcacccacaaccctatttgcttcaacctctctatttcaacctccacgacccccctccatcaaccaaccagccctcc 49975256  T
Q  356 tgcttcgcctcgatttgtgagtcgcccctagcaacaaacatcaaagtaatnnnnnnnctcattttttaatttaggaattttgaag---tttttaaaattg 452  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||   ||||||||||||    
T  49975257 tgcttcgccttaatttgtgagtcgcccctagcaacgaacatcaaagtaat-aaaaaactcattttttaatttaggaattttgaaggtttttttaaaattg 49975355  T
Q  453 agaatatgagcattatcaatagata 477  Q
    |||||||||||||||||||||||||    
T  49975356 agaatatgagcattatcaatagata 49975380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 49974905 - 49975097
Alignment:
Q  7 aaaaaccactataaaactatttattccctttctgcatcaattgtacaaattattctataactcaaaattttgatatcatatttatcttcctaaaacataa 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  49974905 aaaaaccaccataaaactatttattccctttctgcatcaattgtacaaattattctataactcgaaattttgttatcatatttatcttcctaaaacataa 49975004  T
Q  107 aaaccaattatagtactaatgacgcaccaccaacaactaaattttttcacttttctttgtcgccgccctcctcctcctcctcctcatcatcat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  49975005 aaaccaattatagtactaatgacgcaccaccaacaactaaattttttcacttttctttgtctccgccctcctcctcatcctcgtcatcatcat 49975097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 534 - 706
Target Start/End: Original strand, 49975437 - 49975606
Alignment:
Q  534 cccaaaaaccaaaacatgtatttaattctacccgggccacgggctaaacagactagcgcgtaactatgtcaattaatgttttaatttatgtggcaattta 633  Q
    |||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |    
T  49975437 cccaaaaaccgaaacatgtatttaattctacctgggccacgggttaaacggactagtgcgtaactatgtcaattaatgttttaatttatgtgacaattca 49975536  T
Q  634 aaatgttttgattgattatttgtgcaaaattgttttggttgtcaacccaccaccaccaccattatacttttaa 706  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  49975537 aaatgttttgattgattgtttgtgcaaaattgttttggttgtcaac---ccaccaccaccattatacttttaa 49975606  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 705 - 758
Target Start/End: Original strand, 49976589 - 49976642
Alignment:
Q  705 aaattttaaagttttatagaatttttctcaagtcgctcaaaatgggtctctgtg 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49976589 aaattttaaagttttatagaatttttctcaagtcgctcaaaatggatctctgtg 49976642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 8231806 - 8231900
Alignment:
Q  7 aaaaaccactataaaactatttattccctttctgcatcaattgtacaaattattctataactcaaaattttgatatcatatttatcttcctaaaa 101  Q
    ||||||| | ||||||| ||||||| | |||  |||||||||||| | |||||||||||||||| | ||||| |||||||||||| |||| ||||    
T  8231806 aaaaaccgccataaaaccatttatttcattttcgcatcaattgtatatattattctataactcatagttttgttatcatatttattttccaaaaa 8231900  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 686
Target Start/End: Original strand, 26132071 - 26132144
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccac 686  Q
    |||||| || |||||||| | ||| |||||||||||||| ||||||||| |||||||| ||||||||| |||||    
T  26132071 ttaattgatctggcaattcagaatattttgattgattatatgtgcaaaactgttttggattgtcaacctaccac 26132144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 671
Target Start/End: Complemental strand, 36226945 - 36226888
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| ||||||||||||| ||| ||||||||| || | ||||||||||||||||||    
T  36226945 ttaattaatgtggcaatttagaatattttgattggttgtgtgtgcaaaattgttttgg 36226888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Original strand, 34816685 - 34816742
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| ||||||||||| | ||||||||||||| || | ||||||||| ||||||||    
T  34816685 ttaattgatgtggcaattcagaatgttttgattggttgtatgtgcaaaactgttttgg 34816742  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 23977680 - 23977570
Alignment:
Q  9 aaaccactataaaactatttattccctttctgcatcaattgtacaaattattctataactcaaaattttgatatcatatttatcttcctaaaacat-aaa 107  Q
    ||||||| ||||||| ||||||||||||||  |||||||||||   ||||||||| |||||||||||||| |||| ||||||||||||||||| || |||    
T  23977680 aaaccaccataaaaccatttattccctttccacatcaattgtattgattattctaaaactcaaaattttgttatcgtatttatcttcctaaaagataaaa 23977581  T
Q  108 aaccaattata 118  Q
    |||||||||||    
T  23977580 aaccaattata 23977570  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 601 - 669
Target Start/End: Complemental strand, 45105628 - 45105560
Alignment:
Q  601 gtcaattaatgttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    |||||||||| ||||||||||||||| |||||||||| |||| ||| ||||| ||||||||||||||||    
T  45105628 gtcaattaatattttaatttatgtggtaatttaaaatattttaattaattatgtgtgcaaaattgtttt 45105560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 24993327 - 24993269
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttg 670  Q
    |||||||||| ||||||||| | | | |||||||||||||| |||||||||||||||||    
T  24993327 ttttaatttacgtggcaattcatagtattttgattgattatgtgtgcaaaattgttttg 24993269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 621 - 671
Target Start/End: Complemental strand, 30508826 - 30508776
Alignment:
Q  621 atgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||||||||| ||||||||||||||||| | |||||||| |||||||||    
T  30508826 atgtggcaattttaaatgttttgattgattgtgtgtgcaaagttgttttgg 30508776  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 671
Target Start/End: Complemental strand, 44434057 - 44433998
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||||||||||| |||||   |||||||||||||||||| |||| ||| |||||||||    
T  44434057 ttttaatttatgtgtcaattcttaatgttttgattgattatgtgtgtaaagttgttttgg 44433998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Original strand, 36908430 - 36908487
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| ||||| ||||| | |||||||||||||||| |||||||||||  |||||||    
T  36908430 ttaattgatgtgacaattcagaatgttttgattgattgtttgtgcaaaacagttttgg 36908487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 686
Target Start/End: Original strand, 37735016 - 37735089
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccac 686  Q
    |||||| ||||| ||||| | ||||||||||||| || |||||| |||| ||||||||  ||||||||||||||    
T  37735016 ttaattgatgtgtcaattcagaatgttttgattgtttgtttgtgaaaaactgttttggactgtcaacccaccac 37735089  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 606 - 671
Target Start/End: Original strand, 19053797 - 19053862
Alignment:
Q  606 ttaatgttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||||||    
T  19053797 ttaatgttttaattgatgtagcaatttaaaatgttttgattggtcatttgtgcaaaattgttttgg 19053862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 670
Target Start/End: Original strand, 11331010 - 11331059
Alignment:
Q  621 atgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttg 670  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  11331010 atgtggcaatttagaatgttttgattggttatgtgtgcaaaactgttttg 11331059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 670
Target Start/End: Original strand, 11489031 - 11489080
Alignment:
Q  621 atgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttg 670  Q
    ||||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  11489031 atgtggcaatttagaatgttttgattggttatgtgtgcaaaactgttttg 11489080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 670
Target Start/End: Complemental strand, 1765610 - 1765554
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttg 670  Q
    |||||| ||||| |||| | ||||||||||||||||| | |||||||||||||||||    
T  1765610 ttaattgatgtgtcaatattaaatgttttgattgattgtgtgtgcaaaattgttttg 1765554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 669
Target Start/End: Original strand, 21509317 - 21509373
Alignment:
Q  613 tttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    ||||||| || || ||||||||||||||||||||| |  ||||||||||||||||||    
T  21509317 tttaattgatatgacaatttaaaatgttttgattggtcgtttgtgcaaaattgtttt 21509373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 688
Target Start/End: Original strand, 34738716 - 34738803
Alignment:
Q  602 tcaattaatgtttt-aatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccacca 688  Q
    |||||||||||||| |||||| ||| |||||  |||||||| |||||||| | ||||||||||||||||||   |||||||||||||||    
T  34738716 tcaattaatgtttttaatttacgtgacaattctaaatgttt-gattgattgtatgtgcaaaattgttttggaccgtcaacccaccacca 34738803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 688
Target Start/End: Complemental strand, 25871523 - 25871449
Alignment:
Q  613 tttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttggttgtcaacccaccacca 688  Q
    ||||||| | ||| |||||||||| |||||||||| ||   |||||||||||||||||| ||||||| ||||||||    
T  25871523 tttaattgaagtgacaatttaaaa-gttttgattggttgcatgtgcaaaattgttttggatgtcaactcaccacca 25871449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 686
Target Start/End: Original strand, 25871552 - 25871611
Alignment:
Q  628 aatttaaaatgttttgattgattatttgtgcaaaattgtttt-ggttgtcaacccaccac 686  Q
    |||||||||||||||||||||| || ||||||||| |||||| |  ||||||||||||||    
T  25871552 aatttaaaatgttttgattgatcatatgtgcaaaactgttttagactgtcaacccaccac 25871611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Original strand, 24855174 - 24855231
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| ||||| ||||||| ||| ||||||||| || | ||||||||||||||||||    
T  24855174 ttaattgatgtgacaatttagaatattttgattggttgtatgtgcaaaattgttttgg 24855231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 602 - 669
Target Start/End: Original strand, 36880039 - 36880107
Alignment:
Q  602 tcaattaatgt-tttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  36880039 tcaattaatgtatttaatgtatgtgacaatttaaaatgttttgattgattgtatgtgcaaaattgtttt 36880107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 624 - 686
Target Start/End: Original strand, 25911176 - 25911239
Alignment:
Q  624 tggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccac 686  Q
    |||||||||||||||||||||||| |  | ||||||||||||||||||  ||||||||||||||    
T  25911176 tggcaatttaaaatgttttgattggtcgtgtgtgcaaaattgttttggactgtcaacccaccac 25911239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 602 - 669
Target Start/End: Complemental strand, 29048640 - 29048573
Alignment:
Q  602 tcaattaatgttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||| || | ||| |||| |||||||    
T  29048640 tcaattaatgttttcaattatgtgacaatttaaaatgttttgattggttgtatgtacaaagttgtttt 29048573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Original strand, 20906324 - 20906382
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttg 670  Q
    |||||||||| ||||||||||||||| |||||||||||| | | |||||| ||||||||    
T  20906324 ttttaatttacgtggcaatttaaaatattttgattgattgtgtatgcaaagttgttttg 20906382  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 669
Target Start/End: Complemental strand, 4799663 - 4799606
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    |||||||||||||||| ||||| |||| ||||||||||||| | ||||||| ||||||    
T  4799663 ttttaatttatgtggctatttagaatgatttgattgattatgtatgcaaaagtgtttt 4799606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 669
Target Start/End: Complemental strand, 17540956 - 17540899
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    ||||||||| || | ||||||||||||||||||||| |||| |||||||| |||||||    
T  17540956 ttttaatttgtgagacaatttaaaatgttttgattggttatgtgtgcaaagttgtttt 17540899  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 686
Target Start/End: Complemental strand, 9035365 - 9035313
Alignment:
Q  635 aatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccac 686  Q
    |||||||||||||||| ||| ||||||| |||||||| |||||||||||||||    
T  9035365 aatgttttgattgattgtttctgcaaaactgttttggattgtcaacccaccac 9035313  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 613 - 669
Target Start/End: Complemental strand, 10904902 - 10904846
Alignment:
Q  613 tttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    ||||||| ||||| ||||||||||| |||| |||||| || ||||||||||||||||    
T  10904902 tttaattgatgtgacaatttaaaatattttaattgatcatgtgtgcaaaattgtttt 10904846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 647
Target Start/End: Original strand, 20919605 - 20919640
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattg 647  Q
    |||||||||| |||||||||||||||||||||||||    
T  20919605 ttttaatttacgtggcaatttaaaatgttttgattg 20919640  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 671
Target Start/End: Complemental strand, 35503579 - 35503537
Alignment:
Q  629 atttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||| ||||||||||||||||| | ||||||||||||||||||    
T  35503579 attttaaatgttttgattgattctgtgtgcaaaattgttttgg 35503537  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 42170154 - 42170247
Alignment:
Q  7 aaaaaccactataaaactatttattccctttctgcatcaattgtacaaattattctataactcaaaattttgatatcatatttatcttcctaaaa 101  Q
    |||||||||  |||||| |||||||||||||| | |  || |||| |||||||||||||||||||| |||   |||||||||||| ||| |||||    
T  42170154 aaaaaccaccgtaaaac-atttattccctttccgtagtaactgtataaattattctataactcaaattttatttatcatatttattttcataaaa 42170247  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Original strand, 9035403 - 9035460
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| ||||||||||| | ||  ||||||||| |||| ||||||||||||||||||    
T  9035403 ttaattgatgtggcaattcataaaattttgattggttatgtgtgcaaaattgttttgg 9035460  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 32077946 - 32078003
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    ||||||||||||||  |||| | |||||||||||||||| | |||||||| |||||||    
T  32077946 ttttaatttatgtgataattcataatgttttgattgattttgtgtgcaaagttgtttt 32078003  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 612 - 671
Target Start/End: Complemental strand, 43012800 - 43012741
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||    
T  43012800 ttttaatttatgtggcaattcaaaatcttttgattgattatgtgtgcaaagttgttttgg 43012741  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 688
Target Start/End: Complemental strand, 13962693 - 13962617
Alignment:
Q  613 tttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccacca 688  Q
    ||||||| | |||||||||||||||||||||||||||  | ||| ||||||||||||||  ||||||||||| ||||    
T  13962693 tttaattgacgtggcaatttaaaatgttttgattgatcgtgtgtacaaaattgttttggactgtcaacccactacca 13962617  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 688
Target Start/End: Original strand, 34142737 - 34142814
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt-ggttgtcaacccaccacca 688  Q
    |||||||||||||||||||||| ||||||||||||| |  | ||||| || ||||||| |  ||||||||||||||||    
T  34142737 ttttaatttatgtggcaatttagaatgttttgattggtcgtgtgtgccaagttgttttagactgtcaacccaccacca 34142814  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 668
Target Start/End: Original strand, 32287557 - 32287598
Alignment:
Q  627 caatttaaaatgttttgattgattatttgtgcaaaattgttt 668  Q
    |||||| ||||||||||||||| ||| |||||||||||||||    
T  32287557 caattttaaatgttttgattgactatatgtgcaaaattgttt 32287598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 17273337 - 17273246
Alignment:
Q  25 atttattccctttctgcatcaattgtacaaattattctataactcaaaattttgatatcatatttatcttccta-aaacataaaaaccaattata 118  Q
    |||||||||||| |||||||||||||| |||||||||||||||||  ||||||| |||||||| ||| |||||| |||  |||||| ||||||||    
T  17273337 atttattccctt-ctgcatcaattgtataaattattctataactc--aattttgttatcatatctatattcctacaaaattaaaaatcaattata 17273246  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 612 - 670
Target Start/End: Complemental strand, 5793863 - 5793805
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttg 670  Q
    |||||||||| ||| ||||||||||||||||||||  || | |||||||||||||||||    
T  5793863 ttttaatttacgtgacaatttaaaatgttttgatttgttgtgtgtgcaaaattgttttg 5793805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 671
Target Start/End: Complemental strand, 28751268 - 28751210
Alignment:
Q  613 tttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    ||||||| ||||| |||||||||||||||||||| ||| | |||| |||||| ||||||    
T  28751268 tttaattgatgtgacaatttaaaatgttttgattaattgtgtgtgtaaaattattttgg 28751210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 650
Target Start/End: Complemental strand, 26387684 - 26387635
Alignment:
Q  602 tcaattaatgttttaa-tttatgtggcaatttaaaatgttttgattgatt 650  Q
    |||||||||||||| | |||||||||||||||  ||||||||||||||||    
T  26387684 tcaattaatgtttttagtttatgtggcaattttgaatgttttgattgatt 26387635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 646
Target Start/End: Complemental strand, 37257658 - 37257613
Alignment:
Q  602 tcaattaatgtttt-aatttatgtggcaatttaaaatgttttgatt 646  Q
    |||||||||||||| |||||||||| |||||| |||||||||||||    
T  37257658 tcaattaatgtttttaatttatgtgacaatttgaaatgttttgatt 37257613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 26281125 - 26281058
Alignment:
Q  605 attaatgttt-taatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||  |||| |||| |||||||||    
T  26281125 attaatgtttctaatttacgtggcaatttaaaatgttttgattgattgcttgttcaaagttgttttgg 26281058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 669
Target Start/End: Complemental strand, 6560282 - 6560214
Alignment:
Q  602 tcaattaatg-ttttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgtttt 669  Q
    |||||||||| |||||||||| |||| | |||||||| |||||||||||||  |||||||| |||||||    
T  6560282 tcaattaatgattttaatttacgtggtagtttaaaatattttgattgattacatgtgcaaagttgtttt 6560214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 664
Target Start/End: Complemental strand, 32529399 - 32529336
Alignment:
Q  602 tcaattaatgtttt-aatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaatt 664  Q
    |||||||||||||| |||| |||| ||||||| |||||||||||||| || | |||||||||||    
T  32529399 tcaattaatgtttttaattcatgtagcaattttaaatgttttgattggttgtatgtgcaaaatt 32529336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Original strand, 19254992 - 19255049
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| |||||||||||   ||||||||||||| || | ||||||||||||||||||    
T  19254992 ttaattgatgtggcaattctgaatgttttgattggttgtgtgtgcaaaattgttttgg 19255049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 602 - 647
Target Start/End: Original strand, 37141246 - 37141292
Alignment:
Q  602 tcaattaatgtttt-aatttatgtggcaatttaaaatgttttgattg 647  Q
    |||||||||||||| |||||||||||||||| | |||||||||||||    
T  37141246 tcaattaatgtttttaatttatgtggcaattcagaatgttttgattg 37141292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 649
Target Start/End: Complemental strand, 10332032 - 10331995
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgat 649  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  10332032 ttttaatttatgtggcaatttagaatgttttaattgat 10331995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 686
Target Start/End: Complemental strand, 19427844 - 19427771
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccac 686  Q
    |||||| ||||||||||| | ||||||||||| | || | ||||||||| |||||||| | |||||||||||||    
T  19427844 ttaattgatgtggcaattcagaatgttttgatcggttgtgtgtgcaaaactgttttggatcgtcaacccaccac 19427771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 686
Target Start/End: Original strand, 27002550 - 27002603
Alignment:
Q  634 aaatgttttgattgattatttgtgcaaaattgttttgg-ttgtcaacccaccac 686  Q
    ||||||||||||||||| | ||||||||| ||||||||  ||||||||||||||    
T  27002550 aaatgttttgattgattgtatgtgcaaaactgttttggactgtcaacccaccac 27002603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 671
Target Start/End: Original strand, 42060983 - 42061040
Alignment:
Q  614 ttaatttatgtggcaatttaaaatgttttgattgattatttgtgcaaaattgttttgg 671  Q
    |||||| ||||||||||| | |||||||| ||||||| |||||||||||  |||||||    
T  42060983 ttaattgatgtggcaattcagaatgttttaattgattgtttgtgcaaaacagttttgg 42061040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 649
Target Start/End: Complemental strand, 25511 - 25474
Alignment:
Q  612 ttttaatttatgtggcaatttaaaatgttttgattgat 649  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  25511 ttttaatttatgtggcaatttagaatgttttaattgat 25474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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