View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598-INSERTION-2 (Length: 351)
Name: NF0598-INSERTION-2
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598-INSERTION-2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 38177231 - 38177573
Alignment:
| Q |
8 |
caaaagtgtaccactttacatcaatctccgttttatgctcttccatatnnnnnnnnnccagcaaataagaatctaagatgatgatgatgaaccatagtga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38177231 |
caaaagtgtaccactttacatcaatctctgttttacgctcttccatataaaaaaaa-ccagcaaataagaatctaagatgatgatgatgaaccatagtga |
38177329 |
T |
|
| Q |
108 |
ggtacatttgcaaattattcaaaagttgcttagatcaaaagaggaccctaagaaaacaagttgaattttatcgatctataataagttagtcatgattcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38177330 |
ggtacatttgcaaattattcaaaagttgcttagatcaaaagaggaccctaagaaaacaagttgaattttatcgatctataataagttagtcatgattcta |
38177429 |
T |
|
| Q |
208 |
aataaaataggtgaattttagctaaacagttattggtttgaagattaaaattcaaccacattgataaacaaagactaaaaatgagttccaaagagcatct |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38177430 |
aataaaataggtcaattttagctaaacagttattggtttgaagattaaaattcaaccacattgataaacaaagactaaaaatgagttccaaagaacatct |
38177529 |
T |
|
| Q |
308 |
ttcaataaagcaaacattttcctcaaggtcattgacaacatcac |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38177530 |
ttcaataaagcaaacattttcctcaaggtcattgacaacatcac |
38177573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2367 times since January 2019
Visitors: 3818