View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598-INSERTION-5 (Length: 380)
Name: NF0598-INSERTION-5
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598-INSERTION-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 46765643 - 46765282
Alignment:
| Q |
8 |
aaaatcctattaggtgatgtgataatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46765643 |
aaaatcctattaggtgatgtgataatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaa |
46765544 |
T |
|
| Q |
108 |
tatttgtaagttggaggaaaatatatctttccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgccatgagtgtcaatagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46765543 |
tatttgtaagttggaggaaaatatatcttcccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgccatgagtgtcaatagt |
46765444 |
T |
|
| Q |
208 |
taggattattatgtaacttaaacagcaaacatgaggttaatggtaacatgaacgagacatacttgatcattttctagcaatgctctccagttttgcatct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46765443 |
taggattattatgtaacttaaacagcaaacatgaggttaatggtaacatgaacgagacatacttgatcattttctagcaatgctctccagttttgcatct |
46765344 |
T |
|
| Q |
308 |
caacaagtgccttagcagaacggtaggagagagcgatccgataattcaaatctccaagccat |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46765343 |
caacaagtgccttagcagaacggtaggagagagcgatccgataattcaaatctccaagccat |
46765282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 1085981 - 1085814
Alignment:
| Q |
26 |
gtgataatcttaccaagcaggtgttctccttttttccttggggtgcatatcatctcctgagtatcgatctgaattagttgaatatttgtaagttggagga |
125 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| ||||| || |||||||||||||| | || | ||||||||| |||||||| || || |||||||| |
|
|
| T |
1085981 |
gtgatgatcttaccaagcaggtgttcgccttttctcctttggatgcatatcatctccagcatacctatctgaattggttgaatacttatatgttggaggg |
1085882 |
T |
|
| Q |
126 |
aaatatatctttccttcgttccatcccacaaaagcgcggcctcttttttgctctattctcaactgcca |
193 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
1085881 |
aaataaatcttcccttctttccatcctgcaaatgcacggcctcgcttttgctctattctcaactgcca |
1085814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 369
Target Start/End: Complemental strand, 1085728 - 1085633
Alignment:
| Q |
274 |
tcattttctagcaatgctctccagttttgcatctcaacaagtgccttagcagaacggtaggagagagcgatccgataattcaaatctccaagccat |
369 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| ||| ||||| |||||||||||| ||| || || |||||||| ||||||||||||||| |
|
|
| T |
1085728 |
tcattctctaacaatgctctccagttttgcatctcaataagcgccttcgcagaacggtagttgagggctattcgataatttaaatctccaagccat |
1085633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2227 times since January 2019
Visitors: 3815