View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598-INSERTION-6 (Length: 652)

Name: NF0598-INSERTION-6
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598-INSERTION-6
NF0598-INSERTION-6
[»] chr6 (9 HSPs)
chr6 (76-652)||(3855452-3856027)
chr6 (8-107)||(3856023-3856122)
chr6 (294-409)||(32871711-32871827)
chr6 (294-410)||(34713535-34713651)
chr6 (294-413)||(2130447-2130566)
chr6 (294-412)||(6784658-6784776)
chr6 (294-392)||(28867219-28867317)
chr6 (294-357)||(6519274-6519337)
chr6 (333-382)||(11301909-11301958)
[»] chr4 (13 HSPs)
chr4 (477-649)||(24241982-24242147)
chr4 (294-407)||(42504155-42504268)
chr4 (294-409)||(37762841-37762956)
chr4 (294-412)||(16528597-16528718)
chr4 (329-399)||(30220768-30220838)
chr4 (313-410)||(19663339-19663432)
chr4 (344-402)||(19482797-19482855)
chr4 (294-411)||(5288556-5288673)
chr4 (342-407)||(19663274-19663339)
chr4 (329-412)||(24060645-24060726)
chr4 (294-369)||(29065277-29065352)
chr4 (294-351)||(19482552-19482609)
chr4 (294-359)||(41545449-41545514)
[»] chr1 (16 HSPs)
chr1 (294-410)||(29657398-29657514)
chr1 (294-410)||(35413060-35413176)
chr1 (294-410)||(10061626-10061738)
chr1 (294-407)||(35149625-35149738)
chr1 (329-398)||(26470013-26470082)
chr1 (311-407)||(9113421-9113518)
chr1 (294-379)||(43537134-43537219)
chr1 (294-373)||(21540108-21540187)
chr1 (342-407)||(49401982-49402047)
chr1 (323-410)||(48852706-48852793)
chr1 (358-411)||(34475804-34475857)
chr1 (349-410)||(44958465-44958524)
chr1 (329-369)||(23906605-23906645)
chr1 (329-391)||(4684537-4684599)
chr1 (368-410)||(13085034-13085076)
chr1 (294-366)||(11470058-11470130)
[»] chr2 (20 HSPs)
chr2 (294-412)||(19945680-19945798)
chr2 (294-410)||(20143002-20143118)
chr2 (294-405)||(13716673-13716784)
chr2 (294-404)||(27007203-27007313)
chr2 (329-410)||(14131225-14131306)
chr2 (329-410)||(31264827-31264908)
chr2 (294-410)||(3167930-3168045)
chr2 (294-408)||(38320153-38320274)
chr2 (294-410)||(32975978-32976096)
chr2 (294-375)||(37714457-37714538)
chr2 (332-413)||(37899468-37899549)
chr2 (299-410)||(31845453-31845560)
chr2 (292-364)||(5881435-5881507)
chr2 (294-378)||(35457434-35457518)
chr2 (329-403)||(4434369-4434443)
chr2 (329-411)||(27407491-27407572)
chr2 (322-391)||(31645074-31645143)
chr2 (331-407)||(31125376-31125452)
chr2 (347-412)||(24184047-24184112)
chr2 (380-409)||(35458365-35458394)
[»] scaffold0194 (1 HSPs)
scaffold0194 (297-410)||(27067-27180)
[»] chr5 (11 HSPs)
chr5 (294-411)||(30700827-30700944)
chr5 (329-410)||(3040218-3040299)
chr5 (294-407)||(30735282-30735395)
chr5 (329-412)||(30071840-30071923)
chr5 (294-407)||(25493853-25493966)
chr5 (294-411)||(40519213-40519329)
chr5 (294-410)||(34280064-34280180)
chr5 (329-411)||(20359982-20360064)
chr5 (369-415)||(24402154-24402200)
chr5 (333-385)||(9666899-9666951)
chr5 (294-361)||(7547300-7547366)
[»] chr3 (11 HSPs)
chr3 (294-414)||(1632842-1632962)
chr3 (294-414)||(18271917-18272037)
chr3 (294-394)||(26442983-26443083)
chr3 (294-410)||(34905880-34905996)
chr3 (323-410)||(2671966-2672053)
chr3 (323-410)||(31192122-31192209)
chr3 (331-410)||(45852892-45852971)
chr3 (294-410)||(1713936-1714052)
chr3 (333-410)||(10593419-10593496)
chr3 (294-410)||(48897640-48897754)
chr3 (294-384)||(40840633-40840722)
[»] chr8 (10 HSPs)
chr8 (296-408)||(25124406-25124518)
chr8 (294-412)||(38585044-38585162)
chr8 (294-408)||(5718407-5718521)
chr8 (294-382)||(5686276-5686364)
chr8 (294-410)||(29414416-29414532)
chr8 (329-409)||(33543416-33543494)
chr8 (294-374)||(26415586-26415666)
chr8 (329-408)||(24068076-24068156)
chr8 (384-413)||(29543650-29543679)
chr8 (322-410)||(43063810-43063898)
[»] chr7 (13 HSPs)
chr7 (307-410)||(46413701-46413804)
chr7 (294-411)||(20125624-20125741)
chr7 (294-389)||(22631514-22631609)
chr7 (294-413)||(23611705-23611823)
chr7 (294-412)||(21882727-21882843)
chr7 (294-410)||(8123725-8123841)
chr7 (323-410)||(19511473-19511560)
chr7 (294-382)||(1985040-1985128)
chr7 (294-410)||(24250418-24250528)
chr7 (323-369)||(44601063-44601109)
chr7 (330-366)||(23730507-23730543)
chr7 (354-413)||(15127545-15127604)
chr7 (294-358)||(46297647-46297711)
[»] scaffold0247 (1 HSPs)
scaffold0247 (294-409)||(19224-19339)
[»] scaffold0122 (1 HSPs)
scaffold0122 (294-410)||(18668-18786)


Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 76 - 652
Target Start/End: Complemental strand, 3856027 - 3855452
Alignment:
Q  76 tgctgattgtatcttcaccattaaccatgctgctatttttgttgattttctagacatatgtgtattgcttggccttaatataattggcatcacaatattc 175  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3856027 tgctgattgtatcttcaccatttgccatgctgctatttttgttgattttctagacatatgtgtattgcttggccttaatataattggcatcacaatattc 3855928  T
Q  176 atgattggcgccaatttcacctaaannnnnnnattgtggtttgtccaatgtcccttggcgcctgacattttttgaagagtatcgctatttatttagagan 275  Q
    |||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  3855927 atgattcgcgccaatttcacctaaatttttttattgtggtttgtccaatgtcccttggcgcctgacattttttgaagagtatcgctatttatctagagat 3855828  T
Q  276 nnnnnnaagagtatcactatttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaatttt 375  Q
          ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3855827 tttttgaagagtatcgctacttgttatttgacggaaattaagggatgtaataatgtgtaattaaggaaaggtgttagcaa-tacactgtcttgaaatttt 3855729  T
Q  376 cttgataaattttgtcactgtatctatcatttcccataaggttaacattgaaaagcttgcttttaattcatttacctatttctcttaatattgtttagca 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3855728 cttgataaattttgtcactgtatctatcatttcccataaggttaacattgaaaagcttgcttttaattcatttacctatttctcttaatattgtttagca 3855629  T
Q  476 ctgctatcgatcgcgaaataaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtttgaaata 575  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3855628 ctgctattgatcgcgaaagaaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtttgaaata 3855529  T
Q  576 aaatgatgtagaaagatattaaaattttaccgtcgtccatcgggatgttgtcgtgaaaggaattctcgtgataaata 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3855528 aaatgatgtagaaagatattaaaattttaccgtcgtccatcgggatgttgtcgtgaaaggaattcttgtgataaata 3855452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 3856122 - 3856023
Alignment:
Q  8 aaagatgtcatgacaaagtgcatatctttctctagattgtccatcatcactaatccttggatgctcattgctgattgtatcttcaccattaaccatgctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  3856122 aaagatgtcatgacaaagtgcatatctttctctagattgtccatcatcactaatccttggatgctcattgctgattgtatcttcaccatttgccatgctg 3856023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 409
Target Start/End: Complemental strand, 32871827 - 32871711
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtctt-gaaattttcttgataaattttgtca 392  Q
    |||||||||||||||||||| || ||| |||||| ||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||||||||||    
T  32871827 atttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaaaatgttagtaaatacactgtcttagaaattttcttgataaattttgtca 32871728  T
Q  393 ctgtatctatcatttcc 409  Q
     ||||||||||||||||    
T  32871727 ttgtatctatcatttcc 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 34713535 - 34713651
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| || |||| || |||||||||  |||||| ||||| |||||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  34713535 atttgttatttggcgaaaatcaagggatgtaatggtgtgtatttaagaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttgtcac 34713634  T
Q  394 tgtatctatcatttccc 410  Q
    |||||||||||||||||    
T  34713635 tgtatctatcatttccc 34713651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 2130566 - 2130447
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| |||||| || ||  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |     
T  2130566 atttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaaggtgttagcaaatacaccgttttgaaattttcttgataaattttatgat 2130467  T
Q  394 tgtatctatcatttcccata 413  Q
    | ||||||||||||| ||||    
T  2130466 tatatctatcatttcgcata 2130447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 6784776 - 6784658
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || |||  ||||  |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||  ||||||||||    
T  6784776 atttgttatttgtcggaaatcaagggagataatggtgtgtaattaagaaaaggtgttagcaaatacactatctcgaaattttcttgatgcattttgtcac 6784677  T
Q  394 tgtatctatcatttcccat 412  Q
    | |||||||||||||||||    
T  6784676 tatatctatcatttcccat 6784658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 28867219 - 28867317
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtca 392  Q
    ||||||||||||  |||||| |||||| |||||| | |||||||||||||| || |||||||||||| ||||||||||||||||||||| | |||||||    
T  28867219 atttgttatttgttggaaatcaaaggaggtaatagtatgtaattaaggaaatgttttagcaaatacattgtcttgaaattttcttgatacaatttgtca 28867317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 6519274 - 6519337
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaat 357  Q
    |||||||||||| || |||| |||||||||||| ||||||||||||| ||| | ||||||||||    
T  6519274 atttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaagaaaatgagttagcaaat 6519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 11301909 - 11301958
Alignment:
Q  333 taattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgata 382  Q
    ||||||||||||| |||||| ||||||||| | || ||||||||||||||    
T  11301909 taattaaggaaagatgttaggaaatacactattttaaaattttcttgata 11301958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 477 - 649
Target Start/End: Original strand, 24241982 - 24242147
Alignment:
Q  477 tgctatcgatcgcgaaataaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtttgaaataa 576  Q
    |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  24241982 tgctattgatcgcgaaagaaaacatgccgagaacatcgcgaatgattttgaaccgtttgatctaggcctttaattaaaatacatgggtggttggaaataa 24242081  T
Q  577 aatgatgtagaaagatattaaaattttaccgtcgtccatcgggatgttgtcgtgaaaggaattctcgtgataa 649  Q
    |||| |||||||||||||||||||| ||       |||||||||||||||||||||| ||||| || ||||||    
T  24242082 aatggtgtagaaagatattaaaattgta-------ccatcgggatgttgtcgtgaaaagaattttcatgataa 24242147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 42504268 - 42504155
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||     
T  42504268 atttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttaaaattttcttgatacattttgtcat 42504169  T
Q  394 tgtatctatcattt 407  Q
    ||||||||||||||    
T  42504168 tgtatctatcattt 42504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 37762841 - 37762956
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||||||||||| || | ||||||  |||| ||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||    
T  37762841 atttgttatttgacgaaagtcaaaggaaataatgatgtgtaattaaggaaaagtgttaacaaatacattgtcttgaaatttttttgataaattttgtcac 37762940  T
Q  394 tgtatctatcatttcc 409  Q
    | ||||||||||||||    
T  37762941 tctatctatcatttcc 37762956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 16528597 - 16528718
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatg---tgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 390  Q
    |||||||||||| ||||||| ||| ||| || |||||   ||||||||| |||| |||||| |||||||||| |||| |||||||||||||| || ||||    
T  16528597 atttgttatttgtcggaaatcaaatgatatattaatggtgtgtaattaaagaaatgtgttaacaaatacactatcttaaaattttcttgatacatgttgt 16528696  T
Q  391 cactgtatctatcatttcccat 412  Q
    | ||||||||||||||||||||    
T  16528697 cgctgtatctatcatttcccat 16528718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 30220768 - 30220838
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatc 399  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||    
T  30220768 tgtgtaattaaggaaaagtgttagcaaatacactgtcttaaaattttcttgatacattttgtcaccgtatc 30220838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 19663339 - 19663432
Alignment:
Q  313 ttaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||| ||| ||||| ||||||||||||| ||||||     |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  19663339 ttaagggaggtaatgatgtgtaattaagaaaaggta----caaatacactctcttaaaattttcttgataaattttgtcactgtatctatcatttccc 19663432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 19482797 - 19482855
Alignment:
Q  344 aggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctat 402  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19482797 aggtgttaacaaataaactgtcttgaaattttcttgataaattttgtcactgtatctat 19482855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 5288556 - 5288673
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| || |||| || |||  ||||  |||||||||||  ||| ||||||||||||| || ||||||||| |||||||||| | ||||||||    
T  5288556 atttgttatttgccgtaaatcaagggagataatggtgtgtaattaaaaaaatgtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcac 5288655  T
Q  394 tgtatctatcatttccca 411  Q
    | ||||||||||||||||    
T  5288656 tctatctatcatttccca 5288673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 342 - 407
Target Start/End: Complemental strand, 19663339 - 19663274
Alignment:
Q  342 aaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 407  Q
    |||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  19663339 aaaggtgttaacaaatacactgtcttgacattttttttataaattttgtcactgtatctatcattt 19663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 24060645 - 24060726
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 412  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||||| ||| |  ||||||||||| | | ||||||||||    
T  24060645 tgtgtaattaaggaaatgtgttagcaaatacactgttttaaaattttcttaataca--ttgtcactgtaccaagcatttcccat 24060726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 29065352 - 29065277
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttga 369  Q
    |||||||||||||||||||| || ||| |||||  ||||||||||| ||||||||||| | ||| ||| |||||||    
T  29065352 atttgttatttgacggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttaactaatgcaccgtcttga 29065277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 19482552 - 19482609
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgtta 351  Q
    |||||||||||| ||||||| || ||| |||||  |||||||||||||||||||||||    
T  19482552 atttgttatttggcggaaatcaagggaagtaatggtgtgtaattaaggaaaggtgtta 19482609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 41545449 - 41545514
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatac 359  Q
    |||||||||||| | |||||  ||| | |||||  ||||||||||| |||||||||||||||||||    
T  41545449 atttgttatttggcagaaatcgaagaaggtaattgtgtgtaattaatgaaaggtgttagcaaatac 41545514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 29657398 - 29657514
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| || |||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29657398 atttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaaatttgtcac 29657497  T
Q  394 tgtatctatcatttccc 410  Q
    |||||||||||||||||    
T  29657498 tgtatctatcatttccc 29657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 35413060 - 35413176
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||||||||||| || ||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  35413060 atttgttatttgacggaaatcaagggaggtaatagtgtgtaattaaggaaaggtgttaacaaatacactctcttgaaattttcttgataaattttgtcat 35413159  T
Q  394 tgtatctatcatttccc 410  Q
    | |||||||||||||||    
T  35413160 tatatctatcatttccc 35413176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 10061626 - 10061738
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||||| ||||| || ||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||      
T  10061626 atttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaataaactgtcttgaaattttcttgataaattttgtc-- 10061723  T
Q  394 tgtatctatcatttccc 410  Q
      |||||||||||||||    
T  10061724 --tatctatcatttccc 10061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 35149738 - 35149625
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||||||||||  |||| || |||  |||| |||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||    
T  35149738 atttgttatttgacataaatcaagggagataatgatgtataattaaggaaaggtgttagcaaatacattctcttgaaatttttttgataaattttgtcac 35149639  T
Q  394 tgtatctatcattt 407  Q
    |||| |||||||||    
T  35149638 tgtacctatcattt 35149625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 26470013 - 26470082
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtat 398  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  26470013 tgtgtaattaaggaaaggtgttagcaaatacactgttttaaaattttcttgataaattttatcactgtat 26470082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 9113518 - 9113421
Alignment:
Q  311 aattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaa-tacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 407  Q
    |||||| ||| ||||| || ||||||||||||||||| |||||||| |||||| |||| |||||||||||||| ||||| ||||||||||||||||||    
T  9113518 aattaagggaggtaatgatctgtaattaaggaaaggttttagcaaaatacactctcttaaaattttcttgatatattttatcactgtatctatcattt 9113421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 43537219 - 43537134
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttg 379  Q
    |||||||||||| ||||||| || ||| |||||  ||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  43537219 atttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaagaaatgtgttaacaaatacactgtcttgaaattttcttg 43537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 21540108 - 21540187
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaatt 373  Q
    |||||||||||| |||||||||| |||  |||| | |||||||||| ||||||||||| |||||||||||||||||||||    
T  21540108 atttgttatttggcggaaattaagggagataatgaagtgtaattaaagaaaggtgttaacaaatacactgtcttgaaatt 21540187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 342 - 407
Target Start/End: Original strand, 49401982 - 49402047
Alignment:
Q  342 aaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 407  Q
    |||| |||||||||||||| ||  ||||||| || |||||||||||||||||||||||||||||||    
T  49401982 aaagatgttagcaaatacattggtttgaaatctttttgataaattttgtcactgtatctatcattt 49402047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 48852706 - 48852793
Alignment:
Q  323 taataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||| |||| |||||||| |||  ||||| |||||||| ||| || ||| ||| ||||||||||||||||||| ||||||||||||||    
T  48852706 taatgatgtataattaagaaaaaatgttaacaaatacattgttttaaaaattttttgataaattttgtcactggatctatcatttccc 48852793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 34475804 - 34475857
Alignment:
Q  358 acactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 411  Q
    |||||||||| |||||||||| ||| |||||||||||||||| |||||||||||    
T  34475804 acactgtcttaaaattttcttaatacattttgtcactgtatccatcatttccca 34475857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 44958524 - 44958465
Alignment:
Q  349 ttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||||||||||||| |||| |||||||||| ||| ||||||||||  |||||||||||||||    
T  44958524 ttagcaaatacactctcttcaaattttcttaatacattttgtcac--tatctatcatttccc 44958465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 23906645 - 23906605
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttga 369  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  23906645 tgtgtaattaaagaaaggtgttagcaaatacattgtcttga 23906605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 4684537 - 4684599
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtc 391  Q
    ||||||||||||||||||||||||||||||   ||| |  |||||||||||||  ||||||||    
T  4684537 tgtgtaattaaggaaaggtgttagcaaatatgttgtttgaaaattttcttgatgcattttgtc 4684599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 13085076 - 13085034
Alignment:
Q  368 gaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||    
T  13085076 gaaattttcttgatacattttgtcattgtatctattatttccc 13085034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 11470058 - 11470130
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtct 366  Q
    |||||||||||| ||||||| || ||| ||||| ||||||||||||| |||  |||||  ||||||| |||||    
T  11470058 atttgttatttggcggaaatcaagggaggtaatgatgtgtaattaagaaaatatgttaagaaatacattgtct 11470130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 19945798 - 19945680
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||||    
T  19945798 atttgttatttgacggaaattaagggaggtaatggtgtgtaattaaggaaagatattaacaaatacactgtcttaaaattttcttgataaattttgtcac 19945699  T
Q  394 tgtatctatcatttcccat 412  Q
    |||||||||||||| ||||    
T  19945698 tgtatctatcattttccat 19945680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 20143002 - 20143118
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||| ||||||| ||||||| || | | ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  20143002 atttattatttggcggaaatcaaggaaggtaatgatgtgtaattaaggaaaggtgttagaaaatacactatcttgaaattttcttgataaattttgtcac 20143101  T
Q  394 tgtatctatcatttccc 410  Q
    |||||||||||||||||    
T  20143102 tgtatctatcatttccc 20143118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 13716784 - 13716673
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||| ||||| || |||| |||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13716784 atttgtgatttggcgaaaatcaaaggaggtaatagtgtgtaattaagaaaaggtgttagcaaatacactgttttgaaattttcttgataaattttgtcac 13716685  T
Q  394 tgtatctatcat 405  Q
    ||||||||||||    
T  13716684 tgtatctatcat 13716673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 27007203 - 27007313
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| |||||| |||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  27007203 atttgttatttggcggaaatcaagggaggtaatagtgtgtatttaaggaaaagtgttaacaaatacactgtcttaaaattttcttgataaattttgtcac 27007302  T
Q  394 tgtatctatca 404  Q
    |||||||||||    
T  27007303 tgtatctatca 27007313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 14131225 - 14131306
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  14131225 tgtgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttcataaattttgtcactgtatctatcatttccc 14131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 31264827 - 31264908
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||||||||||||||| ||||||||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||||    
T  31264827 tgtgtaattaaggaaaagtgttagcaaatacactatcttaaaatttgtttgataaattttgtcactgtatctatcatttccc 31264908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 3167930 - 3168045
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||| ||||||| ||||||| |||| | ||||| |||||||||||| |||||||||||||||||| ||| | |  |||||||||||||||||||||||||    
T  3167930 atttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaaagaaaggtgttagcaaatatactatttaaaaattttcttgataaattttgtcac 3168029  T
Q  394 tgtatctatcatttccc 410  Q
    | |||||||||||||||    
T  3168030 t-tatctatcatttccc 3168045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 294 - 408
Target Start/End: Complemental strand, 38320274 - 38320153
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaa-------ttttcttgataaatt 386  Q
    ||||||||||||  |||||| |||||| ||||| |||||||| |||||||| |||||| ||||||||||||||| |||       |||||||||||||||    
T  38320274 atttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataaggaaatgtgttatcaaatacactgtcttaaaattttcttttttcttgataaatt 38320175  T
Q  387 ttgtcactgtatctatcatttc 408  Q
    ||| ||||||||||||||||||    
T  38320174 ttgccactgtatctatcatttc 38320153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 32976096 - 32975978
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatg---tgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgt 390  Q
    |||||||||||| ||||||| |||| | |||| ||||   |||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||||    
T  32976096 atttgttatttgtcggaaatcaaagaaggtaa-aatggtatgtaattaagaaaaggtgttagtaaatacactgttttgaaattttcttgatacatattgt 32975998  T
Q  391 cactgtatctatcatttccc 410  Q
    |  |||||||||||||||||    
T  32975997 cgatgtatctatcatttccc 32975978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 37714457 - 37714538
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaatttt 375  Q
    ||||||||||||| |||||| ||||||  ||||  ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  37714457 atttgttatttgatggaaatcaaaggagataatggtgtgtaattaaggaaaggtgttagcaaatacactgccttaaaatttt 37714538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 332 - 413
Target Start/End: Complemental strand, 37899549 - 37899468
Alignment:
Q  332 gtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccata 413  Q
    ||||||| ||||| ||||||| ||||||| |||||  ||| |||||||||| ||||||||||||||||||||||||||||||    
T  37899549 gtaattatggaaatgtgttagtaaatacattgtctaaaaaatttcttgatacattttgtcactgtatctatcatttcccata 37899468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 31845453 - 31845560
Alignment:
Q  299 ttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtat 398  Q
    ||||||| ||||||| ||  || |||||  ||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||| ||||    |||||    
T  31845453 ttatttgtcggaaatcaagagaggtaatggtgtgtaattaaggtaagatgttagcaaatacactgtctaaaaattttcttgataaaatttg----tgtat 31845548  T
Q  399 ctatcatttccc 410  Q
    ||||||||||||    
T  31845549 ctatcatttccc 31845560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 5881507 - 5881435
Alignment:
Q  292 ctatttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgt 364  Q
    |||||||||||||  ||||||| || | ||||||| |||||||||||||||||||| |||||||||| |||||    
T  5881507 ctatttgttatttaccggaaatcaaggaatgtaatgatgtgtaattaaggaaaggtattagcaaatatactgt 5881435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 35457434 - 35457518
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttctt 378  Q
    |||| ||||||  ||||||| |||||| |||||  |||||||||||||||| |||||| |||||| ||| |||| ||||||||||    
T  35457434 atttattatttagcggaaatcaaaggaggtaatggtgtgtaattaaggaaatgtgttaacaaatatactatcttaaaattttctt 35457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 4434369 - 4434443
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatc 403  Q
    |||||||||||| ||| ||||| ||||||| | ||| ||||||||||||| ||| | ||||||||||||| ||||    
T  4434369 tgtgtaattaagtaaatgtgttggcaaatatattgttttgaaattttcttaatacagtttgtcactgtatatatc 4434443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 411
Target Start/End: Original strand, 27407491 - 27407572
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 411  Q
    |||||||||||||||| || |||||||||||| | |||| ||||||| ||  |  | ||||||||||||||||||||||||||    
T  27407491 tgtgtaattaaggaaatgtattagcaaatacagtatcttaaaattttgtt-cttgagtttgtcactgtatctatcatttccca 27407572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 31645143 - 31645074
Alignment:
Q  322 gtaataatgtgtaattaaggaaagg-tgttagcaaatacactgtcttgaaattttcttgataaattttgtc 391  Q
    ||||| ||||||||||||| ||||| |||||||||||||| | |||| |||||||| ||||||||||||||    
T  31645143 gtaatgatgtgtaattaagaaaagggtgttagcaaatacattctcttaaaattttc-tgataaattttgtc 31645074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 407
Target Start/End: Original strand, 31125376 - 31125452
Alignment:
Q  331 tgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcattt 407  Q
    |||||||||| ||| ||||||  ||||||||| |||| | ||||| |||||| | |||||||||| |||||||||||    
T  31125376 tgtaattaagaaaatgtgttaataaatacactatcttaagatttttttgatatagtttgtcactgaatctatcattt 31125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 24184047 - 24184112
Alignment:
Q  347 tgttagcaaatacactgtcttgaaatt-ttcttgataaattttgtcactgtatctatcatttcccat 412  Q
    |||||||||||||||||||| ||| || || || ||  |||||||||||||||||||||||||||||    
T  24184047 tgttagcaaatacactgtct-gaatttattttttatgcattttgtcactgtatctatcatttcccat 24184112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 409
Target Start/End: Original strand, 35458365 - 35458394
Alignment:
Q  380 ataaattttgtcactgtatctatcatttcc 409  Q
    ||||||||||||||||||||||||||||||    
T  35458365 ataaattttgtcactgtatctatcatttcc 35458394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 27180 - 27067
Alignment:
Q  297 tgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgt 396  Q
    ||||||||| ||||||| || |||  |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27180 tgttatttggcggaaatcaagggagataatagagtgtaattaaggaaaggtgttaacaaatacactgtcttgaaattttcttgataaattttgtcactgt 27081  T
Q  397 atctatcatttccc 410  Q
    ||||||||||||||    
T  27080 atctatcatttccc 27067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 30700944 - 30700827
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||||||||||| ||||||| ||| |||||  |||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30700944 atttgttatttgacgaaaattaagggaggtaatgttgtgtaattaagaaaaggtgttagcaaatacactgtcttaaaatttttttgataaattttgtcac 30700845  T
Q  394 tgtatctatcatttccca 411  Q
    || | |||||||||||||    
T  30700844 tgcacctatcatttccca 30700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 410
Target Start/End: Complemental strand, 3040299 - 3040218
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  3040299 tgtgtaattaaggaaaggtgttagcaaatacactgtcttaaaattttcttgataaattttgtcactgtgtctattatttccc 3040218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 30735395 - 30735282
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| |||||  || ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30735395 atttgttatttggcggaaatcaagggaggtaatgctgggtaattaagaaaaagtgttagcaaatacactgttttgaaattttcttgataaattttgtcac 30735296  T
Q  394 tgtatctatcattt 407  Q
    |||| |||||||||    
T  30735295 tgtacctatcattt 30735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 30071840 - 30071923
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccat 412  Q
    ||||||||| |||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||    
T  30071840 tgtgtaattgaggaaaggagttagcaaatacattgtcttaaaattttcttcataaattttgtcactctatctatcatttcccat 30071923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 294 - 407
Target Start/End: Original strand, 25493853 - 25493966
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||| |||| | ||||| |||||| |||||  |||||||||||||||| || ||| |||||| |||||||||||||||||| |||| || |||||||    
T  25493853 atttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaaggaaatgtattaacaaatatactgtcttgaaattttctggatacatgttgtcac 25493952  T
Q  394 tgtatctatcattt 407  Q
    ||||||||||||||    
T  25493953 tgtatctatcattt 25493966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 40519213 - 40519329
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||||||||| |||||| |  ||| ||||| ||||||||||||| |||  | || |||||||||||||||| ||||||||||||||| |||||||||    
T  40519213 atttgttatttgatggaaatcag-ggaggtaatgatgtgtaattaagaaaaaatattggcaaatacactgtcttaaaattttcttgataatttttgtcac 40519311  T
Q  394 tgtatctatcatttccca 411  Q
    ||||| ||||||||||||    
T  40519312 tgtatttatcatttccca 40519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 34280180 - 34280064
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| |||||||||| | |  ||||  | ||||||||||||||| ||||| ||||||||||| ||| |||| || |||||||||| ||||||    
T  34280180 atttgttatttggcggaaattaaggaagataatggtatgtaattaaggaaagatgttaacaaatacactgacttaaaatattattgataaattctgtcac 34280081  T
Q  394 tgtatctatcatttccc 410  Q
    |||||||||||||||||    
T  34280080 tgtatctatcatttccc 34280064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 329 - 411
Target Start/End: Original strand, 20359982 - 20360064
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccca 411  Q
    ||||||||||| |||||||||||||||||| || ||||||||| |||||||||| | ||||||||| ||||||||||||||||    
T  20359982 tgtgtaattaaagaaaggtgttagcaaatataccgtcttgaaactttcttgatacagtttgtcactctatctatcatttccca 20360064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 24402154 - 24402200
Alignment:
Q  369 aaattttcttgataaattttgtcactgtatctatcatttcccataag 415  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  24402154 aaattttcttgataaattttgtcattgtatctatcatttcccttaag 24402200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 9666951 - 9666899
Alignment:
Q  333 taattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaat 385  Q
    |||||| ||||||||||||||||||||||  |||| |||||||||||||||||    
T  9666951 taattatggaaaggtgttagcaaatacaccatcttaaaattttcttgataaat 9666899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 7547300 - 7547366
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacac 361  Q
    |||||||||||||||||||| || |||  |||| || |||||||||||||| ||||||||||||||||    
T  7547300 atttgttatttgacggaaatcaa-ggagataatgatttgtaattaaggaaatgtgttagcaaatacac 7547366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 1632842 - 1632962
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||  ||||||| |||||| |||||  ||||||||||| |||| |||||| |||||||||||||||| |||||| |||||||||||||||||    
T  1632842 atttgttattttgcggaaatcaaaggaggtaatggtgtgtaattaaagaaacgtgttaacaaatacactgtcttggaatttttttgataaattttgtcac 1632941  T
Q  394 tgtatctatcatttcccataa 414  Q
    |||||||||||||||||||||    
T  1632942 tgtatctatcatttcccataa 1632962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 18272037 - 18271917
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| |||||  ||||||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  18272037 atttgttatttggcggaaatcaatggaggtaatggtgtgtaattaaagaaaggtgttagcaaatactctatcttaaaattttcttgataaattttgtcac 18271938  T
Q  394 tgtatctatcatttcccataa 414  Q
    | |||||||||||| ||||||    
T  18271937 tatatctatcattttccataa 18271917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 26442983 - 26443083
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| |||||  |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26442983 atttgttatttggcggaaatcaagggaggtaatggtgtgtaattaacaaaaggtgttaccaaatacactgtcttgaaattttcttgataaattttgtcac 26443082  T
Q  394 t 394  Q
    |    
T  26443083 t 26443083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 34905880 - 34905996
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| |  |||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||       
T  34905880 atttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaaggaaaggtgttagcaaatacactgtcttaaaattttctcgatacagtttgttgt 34905979  T
Q  394 tgtatctatcatttccc 410  Q
    ||||||||| |||||||    
T  34905980 tgtatctataatttccc 34905996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 2671966 - 2672053
Alignment:
Q  323 taataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||| |||| | ||||||||    
T  2671966 taatgatgtgtaattaaggaaagatgttaacaaatacactgtcttaaaattttcttgatacattttgtcactttatcaagcatttccc 2672053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 31192122 - 31192209
Alignment:
Q  323 taataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    ||||| ||||||||||||||||| | ||||||||||| ||||||| |||||||||||||| | ||| |||||||||||||||||||||    
T  31192122 taatagtgtgtaattaaggaaagatattagcaaataccctgtcttaaaattttcttgatacagtttatcactgtatctatcatttccc 31192209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 331 - 410
Target Start/End: Complemental strand, 45852971 - 45852892
Alignment:
Q  331 tgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||||||| | ||||||||| |||||||||||||||    
T  45852971 tgtaattaagaaaaggtgttagcaaatacacggtcttaaaattttcttgatacagtttgtcactttatctatcatttccc 45852892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 1714052 - 1713936
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| |||||||||| |||  ||||  ||| |||||||| |||  |||||  ||||||||||||||||||||||| | ||||||||| ||||    
T  1714052 atttgttatttggcggaaattaagggagataattgtgtataattaagaaaatatgttaataaatacactgtcttgaaattttcctaataaattttatcac 1713953  T
Q  394 tgtatctatcatttccc 410  Q
    ||||| |||||||||||    
T  1713952 tgtatttatcatttccc 1713936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 333 - 410
Target Start/End: Complemental strand, 10593496 - 10593419
Alignment:
Q  333 taattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    |||||| | |||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||    
T  10593496 taattaggaaaaggtgttaacaaatacactatcttaaaattttcttgataaattttatcactgtatctatcttttccc 10593419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 48897754 - 48897640
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| || |||| || |||  ||||  |||||||||||| |||| |||||||||||| |||| |||||||  ||||||||| | |||||       
T  48897754 atttgttatttgtcgaaaatcaatggaaataatggtgtgtaattaagaaaagatgttagcaaatagactgccttgaaa--ttcttgatatagtttgttgt 48897657  T
Q  394 tgtatctatcatttccc 410  Q
    |||| ||||||||||||    
T  48897656 tgtaactatcatttccc 48897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 384
Target Start/End: Complemental strand, 40840722 - 40840633
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaa 384  Q
    |||| ||||||| ||||||| |||||| ||||| |||| |||| || |||||  |||| |  ||||||| |||||||||||||||||||||    
T  40840722 atttattatttggcggaaatcaaaggaggtaatgatgtataatcaaagaaaga-gttaacctatacactctcttgaaattttcttgataaa 40840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 296 - 408
Target Start/End: Original strand, 25124406 - 25124518
Alignment:
Q  296 ttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactg 395  Q
    |||||||||| ||||||| ||  ||  |||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  25124406 ttgttatttggcggaaatcaagagagataatgatgtgtaattaagaaaaggtattaacaaatacactgtcttgaaattttcttgataaattttgtcactg 25124505  T
Q  396 tatctatcatttc 408  Q
    |||||||||||||    
T  25124506 tatctatcatttc 25124518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 38585162 - 38585044
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||| ||||| ||||||| |||||| |||||  ||||||||||| |||| ||||||||||||||| ||  |||||||||||||||||||||||||||     
T  38585162 atttgtcatttggcggaaatcaaaggaggtaattgtgtgtaattaaagaaaagtgttagcaaatacattgctttgaaattttcttgataaattttgtcat 38585063  T
Q  394 tgtatctatcatttcccat 412  Q
    || ||||||||||||||||    
T  38585062 tggatctatcatttcccat 38585044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 294 - 408
Target Start/End: Complemental strand, 5718521 - 5718407
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||| ||||||| ||||||| || | | |||||  |||||||||||||||| |||||||||||||||||||||| |||||||||||||| | |||||||     
T  5718521 atttattatttgtcggaaatcaaggaaggtaatggtgtgtaattaaggaaatgtgttagcaaatacactgtcttaaaattttcttgatatagtttgtcat 5718422  T
Q  394 tgtatctatcatttc 408  Q
    |||||||||||||||    
T  5718421 tgtatctatcatttc 5718407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 5686364 - 5686276
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgata 382  Q
    |||||||||||| ||||||| || ||| |||||||| ||||||||| |||| |||||||||||||| || |||||||||||||||||||    
T  5686364 atttgttatttgccggaaatcaagggaggtaataatatgtaattaatgaaatgtgttagcaaatacgctatcttgaaattttcttgata 5686276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 29414416 - 29414532
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| || |||| || | | |||||  ||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||| |||     
T  29414416 atttgttatttgccgaaaatcaaggaaggtaatggtgtttaattaaggaaaggtgttaacaaatgcactgttttgaaattttcttgatatattttatcaa 29414515  T
Q  394 tgtatctatcatttccc 410  Q
     ||||||||||||||||    
T  29414516 ggtatctatcatttccc 29414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 33543416 - 33543494
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcc 409  Q
    |||||||||||  |||||||||| |||||| |||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  33543416 tgtgtaattaaaaaaaggtgttaacaaatatactgtcttgatattttcttgataaattttgtca--gtatctatcatttcc 33543494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 26415586 - 26415666
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattt 374  Q
    |||| ||||||||||||||||||| ||  |||| |||||||||||||||||||| |||||||||| ||| |||| ||||||    
T  26415586 atttattatttgacggaaattaaaagagataatgatgtgtaattaaggaaaggtattagcaaatatactatcttaaaattt 26415666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 329 - 408
Target Start/End: Complemental strand, 24068156 - 24068076
Alignment:
Q  329 tgtgtaattaaggaaaggtgttagcaaatacact-gtcttgaaattttcttgataaattttgtcactgtatctatcatttc 408  Q
    ||||||||||||||||| |||||| |||||||   ||||| | |||||||| ||| | |||||||||||||||||||||||    
T  24068156 tgtgtaattaaggaaagatgttaggaaatacagaagtcttaacattttcttaatacagtttgtcactgtatctatcatttc 24068076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 29543679 - 29543650
Alignment:
Q  384 attttgtcactgtatctatcatttcccata 413  Q
    ||||||||||||||||||||||||||||||    
T  29543679 attttgtcactgtatctatcatttcccata 29543650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 410
Target Start/End: Complemental strand, 43063898 - 43063810
Alignment:
Q  322 gtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    ||||| |||| |||||||  |||| | ||| |||||||| | |||  |||||||||| ||| ||||||||  |||||||||||||||||    
T  43063898 gtaatgatgtataattaaaaaaagatattaacaaatacattatctcaaaattttcttaatacattttgtcgatgtatctatcatttccc 43063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 46413804 - 46413701
Alignment:
Q  307 cggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatt 406  Q
    ||||||| || ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  46413804 cggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacactgtcttgaaatttttttaataaattttgtcaatgtatctatcatt 46413705  T
Q  407 tccc 410  Q
    ||||    
T  46413704 tccc 46413701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 20125624 - 20125741
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||| ||| | |||||||||| |  ||||  ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||     
T  20125624 atttgttacttgtcagaaattaaagaagataatggtgtgtaattaaagaaaggtattagcaaatacactgtcttcaaattttcttgataaaatttgtcat 20125723  T
Q  394 tgtatctatcatttccca 411  Q
    ||||||||||||||||||    
T  20125724 tgtatctatcatttccca 20125741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 22631514 - 22631609
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttg 389  Q
    |||||||||||| ||||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  22631514 atttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgttagctaatacaccgtcttgaaattttcttgataaagtttg 22631609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 23611823 - 23611705
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||||||||||| ||  || |||||    |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |||     
T  23611823 atttgttatttgacggaaatcaagagaggtaatgga-tgtaattaagtaaaggtgttaacaaatacactgttttgaaattttcttgataaattttatcat 23611725  T
Q  394 tgtatctatcatttcccata 413  Q
    ||||||||||||||||||||    
T  23611724 tgtatctatcatttcccata 23611705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 21882843 - 21882727
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| |||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |   | ||||    
T  21882843 atttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatacactgtcttgaaattttctttataca--gtatcac 21882746  T
Q  394 tgtatctatcatttcccat 412  Q
    || ||||||||||||||||    
T  21882745 tggatctatcatttcccat 21882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 8123725 - 8123841
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    ||||||||||||  ||||||||| |||  ||||||||| ||||||| |||||||||||||||||| || ||| | ||||||||| |||| ||||||| ||    
T  8123725 atttgttatttgttggaaattaatggagataataatgtataattaaagaaaggtgttagcaaatataccgtcctaaaattttctggatacattttgttac 8123824  T
Q  394 tgtatctatcatttccc 410  Q
    | |||||||||||||||    
T  8123825 tatatctatcatttccc 8123841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 19511473 - 19511560
Alignment:
Q  323 taataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttccc 410  Q
    ||||| || ||||||||||||||||||||  ||||||||||||| |||||||| |||||||| ||| |||||| ||||||||||||||    
T  19511473 taatagtgagtaattaaggaaaggtgttaataaatacactgtctcgaaatttttttgataaaatttatcactgcatctatcatttccc 19511560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 1985040 - 1985128
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgata 382  Q
    |||||||||||| ||||||| || | | |||||  | |||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  1985040 atttgttatttgccggaaatcaaggaaggtaatggtatgtaattaaggaaatgtgttagcaaatacactatcttaaaattttcttgata 1985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 24250528 - 24250418
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||| ||||||| || ||| |||||  | |||||||||| |||| | |||| |||||| |||||||||||      ||||||| ||||||||    
T  24250528 atttgttatttgtcggaaatcaagggaggtaatggtttgtaattaagaaaagatattagtaaatacgctgtcttgaaa------tgataaaatttgtcac 24250435  T
Q  394 tgtatctatcatttccc 410  Q
    |||||| ||||||||||    
T  24250434 tgtatcaatcatttccc 24250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 44601063 - 44601109
Alignment:
Q  323 taataatgtgtaattaaggaaaggtgttagcaaatacactgtcttga 369  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  44601063 taatgatgtgtaattaagaaaatgtgttagcaaatacactgtcttga 44601109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 23730543 - 23730507
Alignment:
Q  330 gtgtaattaaggaaaggtgttagcaaatacactgtct 366  Q
    |||||||||||||||||||||| ||||||||||||||    
T  23730543 gtgtaattaaggaaaggtgttaacaaatacactgtct 23730507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 15127604 - 15127545
Alignment:
Q  354 aaatacactgtcttgaaattttcttgataaattttgtcactgtatctatcatttcccata 413  Q
    |||||||||||||| |||||||||||||| || |||||||| ||| ||||| || |||||    
T  15127604 aaatacactgtcttaaaattttcttgatacatcttgtcactatatttatcaatttccata 15127545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 46297647 - 46297711
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaata 358  Q
    |||||||||||| || |||| || |||  ||||  |||||||||||||||| |||||||||||||    
T  46297647 atttgttatttgtcgaaaatcaagggagttaatggtgtgtaattaaggaaatgtgttagcaaata 46297711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 409
Target Start/End: Original strand, 19224 - 19339
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaaattttcttgataaattttgtcac 393  Q
    |||||||||||||||||||| |||||| |||||| |||||  ||||  |||||| ||| ||||||||| | ||| |||||||||| ||||||||  ||||    
T  19224 atttgttatttgacggaaatcaaaggaggtaatagtgtgtcgttaaaaaaaggtattaacaaatacacagacttaaaattttcttaataaatttgatcac 19323  T
Q  394 tgtatctatcatttcc 409  Q
      ||||||||||||||    
T  19324 aatatctatcatttcc 19339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 410
Target Start/End: Original strand, 18668 - 18786
Alignment:
Q  294 atttgttatttgacggaaattaaaggatgtaataatgtgtaattaaggaaaggtgttagcaaatacactgtcttgaa-attttcttgataaattttgtca 392  Q
    |||||||||||| || ||||||| |||  ||||  || ||||||||||||| ||||||||||||||||||| |||||  |||| |||||||| ||| |||    
T  18668 atttgttatttgtcgaaaattaagggagataatggtgagtaattaaggaaatgtgttagcaaatacactgttttgaatttttttttgataaaatttatca 18767  T
Q  393 ctg-tatctatcatttccc 410  Q
     || || ||||||||||||    
T  18768 ttgataactatcatttccc 18786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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