View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598-INSERTION-9 (Length: 639)

Name: NF0598-INSERTION-9
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598-INSERTION-9
NF0598-INSERTION-9
[»] chr3 (27 HSPs)
chr3 (81-518)||(49095146-49095592)
chr3 (533-639)||(49095619-49095725)
chr3 (570-632)||(50716902-50716964)
chr3 (570-632)||(50795883-50795945)
chr3 (557-632)||(33439829-33439904)
chr3 (570-632)||(3902253-3902315)
chr3 (570-628)||(46622248-46622306)
chr3 (570-632)||(47739382-47739444)
chr3 (572-632)||(35142729-35142789)
chr3 (564-627)||(500620-500683)
chr3 (570-632)||(3351506-3351568)
chr3 (566-628)||(8735736-8735798)
chr3 (566-628)||(9087977-9088039)
chr3 (570-631)||(35345362-35345423)
chr3 (242-293)||(49089548-49089599)
chr3 (195-245)||(34619009-34619059)
chr3 (565-616)||(40936913-40936964)
chr3 (570-632)||(28873624-28873686)
chr3 (570-632)||(47130992-47131054)
chr3 (566-628)||(48304607-48304669)
chr3 (294-386)||(54229927-54230016)
chr3 (464-517)||(512393-512446)
chr3 (350-386)||(32025023-32025060)
chr3 (570-598)||(8627859-8627887)
chr3 (570-626)||(27142887-27142943)
chr3 (572-624)||(28829184-28829236)
chr3 (570-598)||(43721103-43721131)
[»] chr8 (20 HSPs)
chr8 (566-632)||(44106868-44106934)
chr8 (564-632)||(42280339-42280407)
chr8 (339-516)||(35677238-35677418)
chr8 (570-632)||(34853969-34854031)
chr8 (81-149)||(7692563-7692632)
chr8 (570-632)||(27927396-27927458)
chr8 (570-632)||(34854353-34854415)
chr8 (570-630)||(40995313-40995373)
chr8 (570-632)||(9074182-9074244)
chr8 (319-386)||(39093547-39093615)
chr8 (569-632)||(7981422-7981485)
chr8 (570-632)||(11697763-11697825)
chr8 (417-518)||(28219165-28219269)
chr8 (572-628)||(36403619-36403675)
chr8 (563-630)||(7970199-7970266)
chr8 (571-626)||(28917438-28917493)
chr8 (569-628)||(31234252-31234311)
chr8 (347-386)||(36980627-36980666)
chr8 (570-624)||(37098099-37098153)
chr8 (571-628)||(33472634-33472690)
[»] chr7 (12 HSPs)
chr7 (564-632)||(3936636-3936704)
chr7 (564-624)||(19225037-19225097)
chr7 (570-632)||(9152436-9152498)
chr7 (578-632)||(19819028-19819082)
chr7 (572-632)||(37517710-37517770)
chr7 (565-632)||(36468003-36468070)
chr7 (571-632)||(43737742-43737803)
chr7 (570-632)||(33151761-33151823)
chr7 (566-627)||(5730707-5730768)
chr7 (570-632)||(42864547-42864609)
chr7 (564-629)||(42925077-42925142)
chr7 (319-386)||(25613165-25613233)
[»] chr1 (21 HSPs)
chr1 (564-632)||(52744289-52744357)
chr1 (570-632)||(32817252-32817314)
chr1 (570-632)||(45046308-45046370)
chr1 (565-632)||(7011866-7011933)
chr1 (564-632)||(42546582-42546650)
chr1 (570-632)||(17000964-17001026)
chr1 (570-632)||(34162234-34162296)
chr1 (570-632)||(41584044-41584106)
chr1 (570-627)||(40650151-40650208)
chr1 (570-625)||(40907375-40907430)
chr1 (443-521)||(44318796-44318875)
chr1 (570-632)||(27795459-27795521)
chr1 (568-625)||(6223195-6223252)
chr1 (567-624)||(50262303-50262360)
chr1 (570-630)||(24472273-24472333)
chr1 (588-632)||(49678098-49678142)
chr1 (198-239)||(12181530-12181571)
chr1 (347-386)||(3561415-3561456)
chr1 (564-613)||(22817860-22817909)
chr1 (460-521)||(42928495-42928556)
chr1 (565-626)||(43318756-43318817)
[»] chr4 (24 HSPs)
chr4 (568-623)||(27741595-27741650)
chr4 (570-628)||(46439729-46439787)
chr4 (586-632)||(48318545-48318591)
chr4 (577-626)||(25751900-25751949)
chr4 (564-629)||(54630930-54630995)
chr4 (570-626)||(53893464-53893520)
chr4 (417-521)||(29515511-29515617)
chr4 (570-632)||(38536840-38536902)
chr4 (570-632)||(49001002-49001064)
chr4 (570-632)||(55052132-55052194)
chr4 (572-632)||(25490830-25490890)
chr4 (570-630)||(40704980-40705039)
chr4 (570-632)||(17932584-17932646)
chr4 (319-400)||(42497928-42498009)
chr4 (570-632)||(47874378-47874442)
chr4 (570-630)||(7932266-7932326)
chr4 (572-624)||(42660144-42660196)
chr4 (443-505)||(37770229-37770292)
chr4 (570-616)||(45029411-45029457)
chr4 (337-386)||(48095938-48095988)
chr4 (195-234)||(36761717-36761756)
chr4 (567-632)||(38417419-38417484)
chr4 (572-632)||(2505476-2505536)
chr4 (337-400)||(53836287-53836350)
[»] chr5 (24 HSPs)
chr5 (570-632)||(37183232-37183294)
chr5 (565-632)||(38692233-38692300)
chr5 (570-632)||(31928570-31928632)
chr5 (571-629)||(38872275-38872333)
chr5 (570-626)||(6800392-6800448)
chr5 (565-632)||(14112331-14112398)
chr5 (570-632)||(4064240-4064302)
chr5 (570-623)||(6157989-6158042)
chr5 (570-631)||(12848034-12848095)
chr5 (327-397)||(18514792-18514863)
chr5 (565-628)||(37094241-37094304)
chr5 (570-632)||(20892227-20892289)
chr5 (570-632)||(29863174-29863236)
chr5 (81-175)||(34712940-34713034)
chr5 (570-624)||(37883128-37883182)
chr5 (571-627)||(24203168-24203224)
chr5 (567-607)||(36339472-36339512)
chr5 (564-607)||(18342134-18342177)
chr5 (570-625)||(28624045-28624100)
chr5 (570-632)||(31220782-31220845)
chr5 (349-403)||(5535537-5535590)
chr5 (194-234)||(13858368-13858408)
chr5 (296-386)||(13908549-13908637)
chr5 (570-622)||(27493694-27493746)
[»] chr2 (23 HSPs)
chr2 (570-631)||(17474235-17474295)
chr2 (570-632)||(33451901-33451963)
chr2 (566-626)||(9846971-9847031)
chr2 (565-632)||(4268055-4268122)
chr2 (326-521)||(37773862-37774061)
chr2 (577-628)||(42895000-42895051)
chr2 (570-632)||(44465193-44465255)
chr2 (571-632)||(8450948-8451009)
chr2 (571-632)||(32187324-32187385)
chr2 (350-403)||(33440546-33440599)
chr2 (350-386)||(17766910-17766946)
chr2 (570-632)||(45153344-45153406)
chr2 (571-628)||(25715892-25715949)
chr2 (582-630)||(5508063-5508111)
chr2 (570-622)||(16749887-16749939)
chr2 (564-632)||(27671121-27671189)
chr2 (194-239)||(14389691-14389736)
chr2 (585-632)||(41854354-41854401)
chr2 (451-517)||(32069434-32069500)
chr2 (567-632)||(38065013-38065078)
chr2 (347-387)||(11456863-11456903)
chr2 (319-386)||(27900679-27900747)
chr2 (358-386)||(45293687-45293715)
[»] chr6 (15 HSPs)
chr6 (570-625)||(2540113-2540168)
chr6 (565-624)||(17500867-17500926)
chr6 (565-632)||(29519935-29520002)
chr6 (565-626)||(7423567-7423628)
chr6 (567-632)||(24603842-24603905)
chr6 (572-632)||(1945023-1945083)
chr6 (565-632)||(7416436-7416503)
chr6 (319-397)||(10310453-10310532)
chr6 (585-632)||(13096817-13096864)
chr6 (570-624)||(5700264-5700318)
chr6 (571-628)||(17501535-17501592)
chr6 (570-630)||(14587005-14587065)
chr6 (570-630)||(23407365-23407425)
chr6 (337-384)||(16450255-16450303)
chr6 (415-521)||(29631060-29631167)
[»] scaffold0770 (1 HSPs)
scaffold0770 (570-632)||(4440-4502)
[»] scaffold0029 (1 HSPs)
scaffold0029 (570-632)||(102744-102806)
[»] scaffold0016 (1 HSPs)
scaffold0016 (572-630)||(205576-205634)
[»] scaffold0018 (1 HSPs)
scaffold0018 (581-632)||(173817-173868)
[»] scaffold0027 (1 HSPs)
scaffold0027 (565-626)||(141436-141497)
[»] scaffold0010 (1 HSPs)
scaffold0010 (581-632)||(141124-141175)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 81 - 518
Target Start/End: Original strand, 49095146 - 49095592
Alignment:
Q  81 gcaaagtgttgtttaacagttatgagtagtattttgaaaacaagattttaggaataaaaaggagtatatgtgtcaaaaggagagtgtgaataaaa----- 175  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         
T  49095146 gcaaagtgttgtttagcagttatgagtagtattttgaaaacaagattttaggaataaaaaggagtatatgtgtcaaaaggagggtgtgaataaaaaactc 49095245  T
Q  176 ----aactaagtcaacaactcggccccgkattaggcctcctatttttgtctttgaaaatatttccgtatatcaagtggtatgtaratgaggagatatagt 271  Q
        ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||    
T  49095246 aaaaaactaagtcaacagctcggccccgtattaggcctcctatttttgtctttggaaatatttccgtacgtcaagtggtatgtagatgaggagatatagt 49095345  T
Q  272 ttatgttgcatgtttgatttcatgtgttgatacaatttggattaaagtatattccgaactatttatcccctaaataagggtgtttaggggtgttcagatt 371  Q
    ||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49095346 ttatgttgcatgtttgatttcatgtattgatacagtatggattatagtatattccgaactatttatcccctaaataagggtgtttaggggtgttcagatt 49095445  T
Q  372 ctataatccgaaaaagagtaaggaacacgcccnnnnnnngggatgttcggattattaaatccaaattgcagaaaactcattttccactccaaaacaaagg 471  Q
    |||||||||| | || ||||||||||||||||       |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49095446 ctataatccgtagaaaagtaaggaacacgccctttttttgggatgtttggattattaaatctaaattgcagaaaactcattttccactccaaaacaaagg 49095545  T
Q  472 aaaaactcaatctagattataaaatccaaaaattccatggacatttt 518  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  49095546 aaaaattcaatctagattataaaatccaaaaatcccatggacatttt 49095592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 533 - 639
Target Start/End: Original strand, 49095619 - 49095725
Alignment:
Q  533 ggcgcgtgaaaaatatgtatagtgaaaaaagtaagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49095619 ggcgtgtgaaaagtatgtatagtgaaaaaagtaagagtattacttttcccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 49095718  T
Q  633 cagttca 639  Q
    |||||||    
T  49095719 cagttca 49095725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 50716964 - 50716902
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||    
T  50716964 tattactttttccaccctatggccttctcccgcgccctgtaattttttcaaaaatgcccttgt 50716902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 50795883 - 50795945
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||    
T  50795883 tattactttttccaccctatggccttctcccgcgccctgtaattttttcaaaaatgcccttgt 50795945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 557 - 632
Target Start/End: Complemental strand, 33439904 - 33439829
Alignment:
Q  557 aaaaaagtaagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||| ||||| |||||||||| ||||||||||||||||| |||| ||  ||||||||| |||||||||||||||    
T  33439904 aaaaaaataagactattacttttcccaccctatggccttcttccgcgcctagtaaaattttcaaaaatgcccttgt 33439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 3902253 - 3902315
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  3902253 tattacttttcccaccctatggccttctcccgcgccctgtaatttttcaaaaaatgcccttgt 3902315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 628
Target Start/End: Original strand, 46622248 - 46622306
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    |||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  46622248 tattacttttcccaacctatggccttctcccgcgccctgtaaaattttcaaaaatgccc 46622306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 47739382 - 47739444
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| ||||||||||| |||||||||| | ||||||||||| |||||||||||||||    
T  47739382 tattacttttcccaccctatggtcttctcccgcgctctgtaaaattttcaaaaatgcccttgt 47739444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 572 - 632
Target Start/End: Complemental strand, 35142789 - 35142729
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| ||||| || ||||||    
T  35142789 ttacttttcccaccctatggccttctcccgcgccctgtaaaattttcaaaattgtccttgt 35142729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 564 - 627
Target Start/End: Original strand, 500620 - 500683
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcc 627  Q
    ||||| |||||||||| |||||||||| ||||||||||| ||||||||  ||||||||||||||    
T  500620 taagactattacttttcccaccctatgaccttctcccgcgccctgtaatttttccaaaaatgcc 500683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 3351506 - 3351568
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| ||||| |||| ||||||||| | | |||||||||||||||||||||||||||    
T  3351506 tattacttttcccaccatatgaccttctcccacgctctgtaaaatttccaaaaatgcccttgt 3351568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 8735798 - 8735736
Alignment:
Q  566 agagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    |||||||||||||| ||||||| | | |||||| ||| |||||||||||||||||||||||||    
T  8735798 agagtattacttttcccaccctgttgtcttctcgcgcgccctgtaaaatttccaaaaatgccc 8735736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 9088039 - 9087977
Alignment:
Q  566 agagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    |||||||||||||| ||||||| | | |||||| ||| |||||||||||||||||||||||||    
T  9088039 agagtattacttttcccaccctgttgtcttctcgcgcgccctgtaaaatttccaaaaatgccc 9087977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 35345362 - 35345423
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttg 631  Q
    ||||||||||||||||||||    ||||| ||||||||||||||||| ||||||||||||||    
T  35345362 tattactttttccaccctatccaattctcacgcaccctgtaaaattttcaaaaatgcccttg 35345423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 49089548 - 49089599
Alignment:
Q  242 tcaagtggtatgtaratgaggagatatagtttatgttgcatgtttgatttca 293  Q
    ||||||| |||||| |||||||| | |||||||||||||| |||||||||||    
T  49089548 tcaagtgatatgtaaatgaggagttgtagtttatgttgcaagtttgatttca 49089599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 34619059 - 34619009
Alignment:
Q  195 ccccgkattaggcctcctatttttgtctttgaaaatatttccgtatatcaa 245  Q
    ||||| ||||||| || ||||||||||||||||||||||| |||| |||||    
T  34619059 ccccgtattaggcttcatatttttgtctttgaaaatattttcgtacatcaa 34619009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 616
Target Start/End: Original strand, 40936913 - 40936964
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaattt 616  Q
    |||| |||||||||| ||||||||  |||||||| |||||||||||||||||    
T  40936913 aagactattacttttcccaccctactgccttctcgcgcaccctgtaaaattt 40936964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 28873686 - 28873624
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||| || |||||||||||||||||  ||| |||  |||| ||||||||||||||    
T  28873686 tattactttttctactctatggccttctcccgcgtcctataatttttctaaaaatgcccttgt 28873624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 47131054 - 47130992
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| | ||| |||| |||| |||||| ||||||||| ||| |||||||||||||||    
T  47131054 tattacttttccaaccatatgaccttttcccgcgccctgtaaagttttcaaaaatgcccttgt 47130992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 48304669 - 48304607
Alignment:
Q  566 agagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    |||||||||||||||||||||| | |  ||||| ||| | ||||||||||| |||||||||||    
T  48304669 agagtattactttttccaccctgttgatttctcgcgcgctctgtaaaattttcaaaaatgccc 48304607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 54229927 - 54230016
Alignment:
Q  294 tgtgttgatacaatttggattaaagtatattccgaactatttatcccctaaataagggtgtttaggggtgttcagattctataatccgaaaaa 386  Q
    |||||||||||| |||| ||||   |||| |||||||| |||  || || || ||||||||||| |||| |||| ||||||||||||||||||    
T  54229927 tgtgttgatacagtttgaatta---tataatccgaactgttttgcctctgaaaaagggtgtttaagggttttcatattctataatccgaaaaa 54230016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 517
Target Start/End: Original strand, 512393 - 512446
Alignment:
Q  464 aacaaaggaaaaactcaatctagattataaaatccaaaaattccatggacattt 517  Q
    |||||||||||||||||||  ||||||||||||| ||||| || ||| ||||||    
T  512393 aacaaaggaaaaactcaattcagattataaaatctaaaaactctatgaacattt 512446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 32025060 - 32025023
Alignment:
Q  350 ggtgtttagggg-tgttcagattctataatccgaaaaa 386  Q
    |||||||||||| |||||||||||||||||||||||||    
T  32025060 ggtgtttagggggtgttcagattctataatccgaaaaa 32025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 570 - 598
Target Start/End: Complemental strand, 8627887 - 8627859
Alignment:
Q  570 tattactttttccaccctatggccttctc 598  Q
    |||||||||||||||||||||||||||||    
T  8627887 tattactttttccaccctatggccttctc 8627859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 27142887 - 27142943
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    ||||||||||||||||||||  ||||||  |||| ||| | ||||||||||||||||    
T  27142887 tattactttttccaccctatcaccttcttgcgcatcctatgaaatttccaaaaatgc 27142943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 28829184 - 28829236
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    |||||||| ||| | |||||||||||  ||| |||||||||||||||||||||    
T  28829184 ttacttttcccatcttatggccttcttgcgcgccctgtaaaatttccaaaaat 28829236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 570 - 598
Target Start/End: Original strand, 43721103 - 43721131
Alignment:
Q  570 tattactttttccaccctatggccttctc 598  Q
    |||||||||||||||||||||||||||||    
T  43721103 tattactttttccaccctatggccttctc 43721131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 566 - 632
Target Start/End: Complemental strand, 44106934 - 44106868
Alignment:
Q  566 agagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  44106934 agagtattactttttccaccctatagccttctcctgcgccctgtaaaatttccaaaaatgcccttgt 44106868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 42280339 - 42280407
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  42280339 taagactattacttttcccatcctatggccttctcccgcgccctgtaaaatttccaaaaatgcccttgt 42280407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 339 - 516
Target Start/End: Original strand, 35677238 - 35677418
Alignment:
Q  339 ccctaaataagggtgttta-ggggtgttcagattctataatccgaaaaagagtaaggaacacgcccnnnnnnn-gggatgttcggattattaaatccaaa 436  Q
    |||| |||||||||||||| |||||||||  ||| ||||||| |||||| |||||||||| | |||        ||| |||||||||||| |||||  ||    
T  35677238 ccctgaataagggtgtttatggggtgttcgaattttataatctgaaaaatagtaaggaacgcaccctattttttggggtgttcggattataaaatctgaa 35677337  T
Q  437 ttgcagaaaa-ctcattttccactccaaaacaaaggaaaaactcaatctagattataaaatccaaaaattccatggacatt 516  Q
    |||  ||||| |||||||||||| || |||||| ||||||||||||| | ||||||| ||||  |||||||||||||||||    
T  35677338 ttggtgaaaaactcattttccacccccaaacaagggaaaaactcaattttgattatagaatctgaaaattccatggacatt 35677418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 34854031 - 34853969
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  34854031 tattacttttcccaccctatggccttctcccgcgccctgtaaaattttcagaaatgcccttgt 34853969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 7692563 - 7692632
Alignment:
Q  81 gcaaagtgttgtttaacagttatgagtagtattttgaaaacaaga-ttttaggaataaaaaggagtatat 149  Q
    |||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  7692563 gcaaagagttgtttaaaagttatgagtagtattttgaaaacaagatttttagaaataaaaagaagtatat 7692632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 27927396 - 27927458
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||||||||||| ||| | ||||||||||||||||||| |||||||    
T  27927396 tattacttttcccaccctatggccttctctcgcgcactgtaaaatttccaaaaatacccttgt 27927458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 34854415 - 34854353
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  34854415 tattacttttcctaccctatggccttctcccgcgccctgtaaaattttcagaaatgcccttgt 34854353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 40995373 - 40995313
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||| ||| ||||||||||||||||||  |||||||||||| |||||||||||||    
T  40995373 tattacttttcccatcctatggccttctcccgcgtcctgtaaaattttcaaaaatgccctt 40995313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 9074244 - 9074182
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| ||||| ||||||||||||||||  |||||||||||| |||||||| ||||||    
T  9074244 tattacttttcccaccatatggccttctcccgcgtcctgtaaaattttcaaaaatgtccttgt 9074182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 39093615 - 39093547
Alignment:
Q  319 tatattccgaactatttatcccctaaataagggtgtttag-gggtgttcagattctataatccgaaaaa 386  Q
    |||| ||||||||||||  ||||||||||| ||||||||| ||||||||||||| ||||||| ||||||    
T  39093615 tataatccgaactattttccccctaaataatggtgtttagagggtgttcagattttataatctgaaaaa 39093547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 569 - 632
Target Start/End: Original strand, 7981422 - 7981485
Alignment:
Q  569 gtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||| || |||||||||| | ||||| |||| |||||||| |||||||||||||||||||    
T  7981422 gtattactcttcccaccctatgtcattctcgcgcatcctgtaaattttccaaaaatgcccttgt 7981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 11697763 - 11697825
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||||| || |||||||||| |||| ||||||||| ||| || ||||||||||||    
T  11697763 tattactttttccatcccatggccttcttccgcgccctgtaaatttttcataaatgcccttgt 11697825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 518
Target Start/End: Original strand, 28219165 - 28219269
Alignment:
Q  417 ttcggattattaaatccaaattgcagaaaa-ctcattttc--cactccaaaacaaaggaaaaactcaatctagattataaaatccaaaaattccatggac 513  Q
    |||||||||| ||||||||||||  ||||| ||||||||   ||| ||| |||||||||||||||||||   ||||||||||||| |||||  |||| ||    
T  28219165 ttcggattataaaatccaaattgttgaaaaactcatttttttcaccccataacaaaggaaaaactcaattcggattataaaatcccaaaatcacatgaac 28219264  T
Q  514 atttt 518  Q
    |||||    
T  28219265 atttt 28219269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 572 - 628
Target Start/End: Original strand, 36403619 - 36403675
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    |||||||| ||||||||| |||||||| ||| || |||||||||| |||||||||||    
T  36403619 ttacttttcccaccctatagccttctcgcgcgccttgtaaaattttcaaaaatgccc 36403675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 630
Target Start/End: Original strand, 7970199 - 7970266
Alignment:
Q  563 gtaagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||||||| |||||||||| | | |||||| ||| |||| |||||||| |||||||| ||||    
T  7970199 gtaagagtattactctttccaccctgttgacttctcgcgcgccctataaaattttcaaaaatgtcctt 7970266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 28917493 - 28917438
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||||||||  ||||||||| |||||| |||| ||||||||||||| |||||||||    
T  28917493 attacttttctcaccctatgaccttcttccgcgccctgtaaaattttcaaaaatgc 28917438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 569 - 628
Target Start/End: Original strand, 31234252 - 31234311
Alignment:
Q  569 gtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||||| ||||| | | |||||||| ||||||||||||| |||| ||||||||||    
T  31234252 gtattacttttcccaccttgttgccttctcacgcaccctgtaaattttcaaaaaatgccc 31234311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 36980666 - 36980627
Alignment:
Q  347 aagggtgtttaggggtgttcagattctataatccgaaaaa 386  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  36980666 aagggtgtttaggggtgttcggatgctataatccgaaaaa 36980627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 570 - 624
Target Start/End: Original strand, 37098099 - 37098153
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    |||||||||| ||||||| | |||||||| ||| ||||| |||||||||||||||    
T  37098099 tattacttttcccaccctgttgccttctcgcgcgccctgcaaaatttccaaaaat 37098153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 33472690 - 33472634
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||| |||||||||| | ||||| |||||| ||||||||||| ||||||||||    
T  33472690 attacttttcccaccctatgacattctcacgcacc-tgtaaaatttcaaaaaatgccc 33472634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 564 - 632
Target Start/End: Complemental strand, 3936704 - 3936636
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| |||||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  3936704 taagactattacttttcccaccctatggccttcttccgcgccctgtaaaattttcaaaaatgcccttgt 3936636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 564 - 624
Target Start/End: Original strand, 19225037 - 19225097
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19225037 taagactattattttttccaccctatggccttctcccgcgccctgtaaaatttccaaaaat 19225097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 9152498 - 9152436
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||    
T  9152498 tattactttttccaccctatgaccttctcccgcgcgctgtaaaattttcaaaaatgcccttgt 9152436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 578 - 632
Target Start/End: Complemental strand, 19819082 - 19819028
Alignment:
Q  578 tttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  19819082 tttccaccctatggccttctcccgcgccctgtaaaattttcaaaaatgtccttgt 19819028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 37517710 - 37517770
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||| ||||| ||||| |||||| |||||||||||||| ||||||||||||||    
T  37517710 ttactttttccatcctatagccttttcccgcgccctgtaaaatttctaaaaatgcccttgt 37517770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 36468003 - 36468070
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||| ||||||||||  | |||||||||||||||| || | |||||||||||||||||||||||||||    
T  36468003 aagactattacttttctccccctatggccttctcctgcgctctgtaaaatttccaaaaatgcccttgt 36468070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 571 - 632
Target Start/End: Complemental strand, 43737803 - 43737742
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||| |||||||||| |||||||  || |||||||||||||||||||||||| ||||    
T  43737803 attacttttcccaccctatgaccttctcatgcgccctgtaaaatttccaaaaatgcctttgt 43737742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 33151823 - 33151761
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||| || | ||||| ||||||||||||||||||  |||||||| |||||    
T  33151823 tattactttttccaccccatagtcttcttccgcaccctgtaaaattttaaaaaatgctcttgt 33151761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 566 - 627
Target Start/End: Original strand, 5730707 - 5730768
Alignment:
Q  566 agagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcc 627  Q
    |||||||||||||||| | ||||||||  |||| |||||||| ||||||||| |||||||||    
T  5730707 agagtattactttttctatcctatggcagtctcacgcaccctataaaatttctaaaaatgcc 5730768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 42864547 - 42864609
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||  |||| || ||||||||||||  |||| |||||||| |||||||||||||||    
T  42864547 tattacttttctcaccttaaggccttctcccgtgccctctaaaattttcaaaaatgcccttgt 42864609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 629
Target Start/End: Original strand, 42925077 - 42925142
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccct 629  Q
    ||||| |||||||||| ||| ||||| || ||||| ||| ||||||||  ||||||||||||||||    
T  42925077 taagattattacttttcccatcctatagctttctcacgcgccctgtaatttttccaaaaatgccct 42925142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 25613165 - 25613233
Alignment:
Q  319 tatattccgaactatttatcccctaaataagggtgtttagggg-tgttcagattctataatccgaaaaa 386  Q
    |||| |||||||| | | |||||| ||||| |||||||||||| || || |||||||||||||||||||    
T  25613165 tataatccgaactgtctttcccctgaataatggtgtttagggggtgctcggattctataatccgaaaaa 25613233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 564 - 632
Target Start/End: Original strand, 52744289 - 52744357
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||| ||||||    
T  52744289 taagactattactttttccaccctatgaccttctcccgcaccctgtaaaatttttaaaaatgtccttgt 52744357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 32817252 - 32817314
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  32817252 tattacttttcccaccctatagccttctcccgcgccctgtaaaattttcaaaaatgcccttgt 32817314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 45046308 - 45046370
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  45046308 tattacttttcccaccctacggtcttctcccgcgccctgtaaaatttccaaaaatgcccttgt 45046370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 7011933 - 7011866
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||| ||||||||||||||||||||| ||||||||| |   |||||||||||||||||||||||||||    
T  7011933 aagactattactttttccaccctatgaccttctcccacgatctgtaaaatttccaaaaatgcccttgt 7011866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 564 - 632
Target Start/End: Complemental strand, 42546650 - 42546582
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| ||||||||||  || ||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  42546650 taagactattacttttctcatcctatggccttctcccgcgtcctgtaaaatttccaaaaatgtccttgt 42546582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 17001026 - 17000964
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||| ||||||||||| ||||||||  |||||||||||| ||||||    
T  17001026 tattacttttcccaccctatgaccttctcccgcgccctgtaatttttccaaaaatgtccttgt 17000964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 34162234 - 34162296
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||| ||||||||||| |||| |||  |||||||||||||||||||    
T  34162234 tattacttttcccaccctatgaccttctcccgcgccctataatttttccaaaaatgcccttgt 34162296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 41584044 - 41584106
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||| ||||||||||||| || ||||||||| ||||||||  |||||||||||||||||||    
T  41584044 tattaccttttccaccctatagcattctcccgcgccctgtaatttttccaaaaatgcccttgt 41584106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 570 - 627
Target Start/End: Original strand, 40650151 - 40650208
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcc 627  Q
    |||||||||| |||||||||| ||||||||||| || |||||||||||| ||||||||    
T  40650151 tattacttttcccaccctatgaccttctcccgcgccatgtaaaatttccgaaaatgcc 40650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 570 - 625
Target Start/End: Original strand, 40907375 - 40907430
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatg 625  Q
    ||||||||||||||||||||  |||||||| || ||||||||||||| ||||||||    
T  40907375 tattactttttccaccctataaccttctcctgcgccctgtaaaattttcaaaaatg 40907430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 521
Target Start/End: Complemental strand, 44318875 - 44318796
Alignment:
Q  443 aaaactcatttt-ccactccaaaacaaaggaaaaactcaatctagattataaaatccaaaaattccatggacattttcgt 521  Q
    |||||||||||| |||| ||| | |||||||||||||||||   |||| ||||||||||||||| ||||| |||||||||    
T  44318875 aaaactcatttttccaccccatatcaaaggaaaaactcaattcggattctaaaatccaaaaattacatggccattttcgt 44318796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 27795521 - 27795459
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||||||||||| || ||||| ||||||||||||| |||  ||||||| ||||||    
T  27795521 tattactttttccaccctattgcattctcacgcaccctgtaaattttttaaaaatgtccttgt 27795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 568 - 625
Target Start/End: Original strand, 6223195 - 6223252
Alignment:
Q  568 agtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatg 625  Q
    |||||||||||||||||  |||| |||||||||||| |||||||| ||| ||||||||    
T  6223195 agtattactttttccactatatgaccttctcccgcatcctgtaaatttttcaaaaatg 6223252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 567 - 624
Target Start/End: Complemental strand, 50262360 - 50262303
Alignment:
Q  567 gagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    |||| |||||||||||||| ||| |||||||| ||| ||||| |||||||||||||||    
T  50262360 gagttttactttttccaccatattgccttctcacgcgccctgcaaaatttccaaaaat 50262303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 570 - 630
Target Start/End: Original strand, 24472273 - 24472333
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    ||||||||||||||||||||||| | || ||||  |||||||| ||| |||||||||||||    
T  24472273 tattactttttccaccctatggcttactaccgcgtcctgtaaatttttcaaaaatgccctt 24472333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 588 - 632
Target Start/End: Complemental strand, 49678142 - 49678098
Alignment:
Q  588 atggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||    
T  49678142 atggccttcttccgcgtcctgtaaaatttccaaaaatgcccttgt 49678098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 12181571 - 12181530
Alignment:
Q  198 cgkattaggcctcctatttttgtctttgaaaatatttccgta 239  Q
    || |||||||||| ||||||||||||||||||||||| ||||    
T  12181571 cgtattaggcctcgtatttttgtctttgaaaatattttcgta 12181530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 386
Target Start/End: Original strand, 3561415 - 3561456
Alignment:
Q  347 aagggtgtttagg--ggtgttcagattctataatccgaaaaa 386  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  3561415 aagggtgtttaggagggtgttcagattctataatccgaaaaa 3561456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 613
Target Start/End: Complemental strand, 22817909 - 22817860
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaa 613  Q
    ||||||| |||||||||||||||||| |||||||| ||| ||||| ||||    
T  22817909 taagagttttactttttccaccctattgccttctcgcgcgccctgcaaaa 22817860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 42928556 - 42928495
Alignment:
Q  460 ccaaaacaaaggaaaaactcaatctagattataaaatccaaaaattccatggacattttcgt 521  Q
    |||||||||||| ||||||||||    ||||||||||||||||| | |||||| ||||||||    
T  42928556 ccaaaacaaagggaaaactcaattcgaattataaaatccaaaaaatacatggatattttcgt 42928495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 626
Target Start/End: Original strand, 43318756 - 43318817
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    ||||| |||| |||||||| ||||| |||||||| ||| |||||||||||||  ||||||||    
T  43318756 aagagaattattttttccatcctattgccttctcgcgcgccctgtaaaatttttaaaaatgc 43318817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 27741595 - 27741650
Alignment:
Q  568 agtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaa 623  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  27741595 agtattacttttcctaccctatggccttctcccgcaccctgtaaaatttccaaaaa 27741650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 628
Target Start/End: Original strand, 46439729 - 46439787
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||  ||||||||||    
T  46439729 tattacttttctcaccctatggccttctcccgcaccctgtaaaattttaaaaaatgccc 46439787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 586 - 632
Target Start/End: Original strand, 48318545 - 48318591
Alignment:
Q  586 ctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  48318545 ctatggccttctcccgcgccctgtaaaatttccaaaaatgcccttgt 48318591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 577 - 626
Target Start/End: Original strand, 25751900 - 25751949
Alignment:
Q  577 ttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  25751900 ttttccaccctatggccttctcccgcgccctgtaaaattttcaaaaatgc 25751949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 564 - 629
Target Start/End: Original strand, 54630930 - 54630995
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccct 629  Q
    ||||| |||||||||| |||||||||||||||||| |||  |||||||||||| ||||||||||||    
T  54630930 taagaatattacttttcccaccctatggccttctctcgcgtcctgtaaaattttcaaaaatgccct 54630995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 53893464 - 53893520
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||    
T  53893464 tattacttttcccaccctatggccttctcccacgccctgtaaaattttcaaaaatgc 53893520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 417 - 521
Target Start/End: Original strand, 29515511 - 29515617
Alignment:
Q  417 ttcggattattaaatccaaattgcagaaaa-ctcattttc-cactccaaaacaaaggaaaaactcaatctagattataaaatccaaaaattccatggaca 514  Q
    |||||||||| ||||| ||||||  ||||| ||||||||  || |||| || ||||||||||||||||  |||||||||||| |||||||  ||||||||    
T  29515511 ttcggattataaaatctaaattggtgaaaaactcattttttcaatccataaaaaaggaaaaactcaattcagattataaaattcaaaaatcacatggaca 29515610  T
Q  515 ttttcgt 521  Q
    |||||||    
T  29515611 ttttcgt 29515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 38536902 - 38536840
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||||||||||||||||||  |||   |||||||||||||||||||    
T  38536902 tattacttttcccaccctatggccttctcccgcaccaggtagtttttccaaaaatgcccttgt 38536840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 49001002 - 49001064
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| ||||||||| || ||||| ||||||||||||| ||| |||||||||||||||    
T  49001002 tattacttttaccaccctattgcattctcacgcaccctgtaaatttttcaaaaatgcccttgt 49001064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 55052132 - 55052194
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| |||| |||||||||| ||||||||||| ||||||||  |||||||||||||||||||    
T  55052132 tattatttttcccaccctatgaccttctcccgcgccctgtaatttttccaaaaatgcccttgt 55052194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 25490830 - 25490890
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||| ||||| ||||| |||||  ||| |||||||||||||||||||||||||||||    
T  25490830 ttacttttcccaccttatggtcttctttcgcgccctgtaaaatttccaaaaatgcccttgt 25490890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 40705039 - 40704980
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||| ||||| |||||||||||||||| ||| ||||||||| |||||||||||||    
T  40705039 tattacttttcccacc-tatggccttctcccgcgcccggtaaaattttcaaaaatgccctt 40704980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 17932584 - 17932646
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||| ||| |||||||| ||| ||||||||| ||||| |||||||||||||||| ||||||    
T  17932584 tattacctttcccaccctacggctttctcccgcgccctgcaaaatttccaaaaatgtccttgt 17932646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 42497928 - 42498009
Alignment:
Q  319 tatattccgaactatttatcccctaaataagggtgttta-ggggtgttcagattctataatccgaaaaagagtaaggaacacg 400  Q
    |||| ||||||| ||||  || ||||||||||||||||| ||||||||| ||||||||||||| |||||||  ||||||||||    
T  42497928 tataatccgaacaattttgcctctaaataagggtgtttagggggtgttcggattctataatcc-aaaaagaacaaggaacacg 42498009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 47874442 - 47874378
Alignment:
Q  570 tattactttttccaccctat--ggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||  | ||||||||||| |||||||||||||  ||||||||||||||    
T  47874442 tattacttttcccaccctatatgaccttctcccgcgccctgtaaaatttttaaaaatgcccttgt 47874378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 7932326 - 7932266
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||| | | || ||| ||||||||||| ||||||||||||| |||||||||||||    
T  7932326 tattacttttcctatccaatgaccttctcccgcgccctgtaaaattttcaaaaatgccctt 7932266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 42660144 - 42660196
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    |||||||| ||||||||| |||||||| ||| ||||||||||||| |||||||    
T  42660144 ttacttttcccaccctattgccttctcgcgcgccctgtaaaattttcaaaaat 42660196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 505
Target Start/End: Original strand, 37770229 - 37770292
Alignment:
Q  443 aaaactcatttt-ccactccaaaacaaaggaaaaactcaatctagattataaaatccaaaaatt 505  Q
    |||||||||||| |||| | |||| ||||||||||||||||  ||||||||||||| |||||||    
T  37770229 aaaactcatttttccaccctaaaataaaggaaaaactcaattcagattataaaatctaaaaatt 37770292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 570 - 616
Target Start/End: Complemental strand, 45029457 - 45029411
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaattt 616  Q
    ||||||||||||||||||   |||||||||||||||||| |||||||    
T  45029457 tattactttttccaccctgctgccttctcccgcaccctgcaaaattt 45029411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 48095938 - 48095988
Alignment:
Q  337 tcccctaaataagggtgtttagggg-tgttcagattctataatccgaaaaa 386  Q
    ||||| ||| || |||||||||||| |||||||||||||||||||||||||    
T  48095938 tccccaaaaaaatggtgtttaggggatgttcagattctataatccgaaaaa 48095988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 36761717 - 36761756
Alignment:
Q  195 ccccgkattaggcctcctatttttgtctttgaaaatattt 234  Q
    ||||| ||||| |||| |||||||||||||||||||||||    
T  36761717 ccccgtattagacctcgtatttttgtctttgaaaatattt 36761756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 38417484 - 38417419
Alignment:
Q  567 gagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||||   || |||||||||||||| ||||| |||||| ||| ||||||| |||||||    
T  38417484 gagtattacttttcttacactatggccttctcctgcaccttgtaaatttttcaaaaatacccttgt 38417419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 2505476 - 2505536
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||  ||||||||| | |||||||||  | |||||||||| |||||||||||||||    
T  2505476 ttacttttctcaccctatgacattctcccgcgtcttgtaaaattttcaaaaatgcccttgt 2505536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 53836287 - 53836350
Alignment:
Q  337 tcccctaaataagggtgtttagg-ggtgttcagattctataatccgaaaaagagtaaggaacacg 400  Q
    |||| |||||||||||||||||| | ||||| ||| ||||||||||||||| || ||||||||||    
T  53836287 tcccttaaataagggtgtttaggcgttgttcggatactataatccgaaaaa-agcaaggaacacg 53836350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 37183232 - 37183294
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||    
T  37183232 tattactttttccaccctatgaccttctcccgcgccctgtaaaattttcaaaaatgccattgt 37183294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 38692233 - 38692300
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||| |||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||| ||||||    
T  38692233 aagactattacttttcccaccatatggccttctcccgcgccctgtaaaattttcaaaaatgtccttgt 38692300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 31928570 - 31928632
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| |||| ||| |||||    
T  31928570 tattactttttccatcctatggccttctcccgcgccctgtaaaatttctaaaattgctcttgt 31928632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 38872333 - 38872275
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccct 629  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||    
T  38872333 attacttttcccaccttatggccttctcccgcgccctgtaaaatttcaaaaaatgccct 38872275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 6800392 - 6800448
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||    
T  6800392 tattactttttccaccctatcgcattctcacgcaccctgtaaaatttctaaaaatgc 6800448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 14112398 - 14112331
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||| |||||||||||||||| ||| | |||||||| | ||||||||||||| |||||||||||||||    
T  14112398 aagactattactttttccaccatatagtcttctcccacgccctgtaaaatttgcaaaaatgcccttgt 14112331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 4064240 - 4064302
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| |||| |||||||||| ||||||||||| ||||||||  |||||||||||||||||||    
T  4064240 tattatttttcccaccctatgaccttctcccgcgccctgtaatttttccaaaaatgcccttgt 4064302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 570 - 623
Target Start/End: Complemental strand, 6158042 - 6157989
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaa 623  Q
    |||||||||| ||||||||||||||||||||||  | |||||||||||||||||    
T  6158042 tattacttttcccaccctatggccttctcccgcgacatgtaaaatttccaaaaa 6157989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 12848095 - 12848034
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttg 631  Q
    ||||||||||||||||||||    ||||| |||||||| |||||||||||||||||||||||    
T  12848095 tattactttttccaccctatccaattctcacgcaccctttaaaatttccaaaaatgcccttg 12848034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 18514863 - 18514792
Alignment:
Q  327 gaactatttatcccctaaataagggtgtttagggg-tgttcagattctataatccgaaaaagagtaaggaac 397  Q
    ||||| ||| |||||| |||||||||||||||||| || ||| ||||||||||||||||||  |||||||||    
T  18514863 gaactgtttttcccctgaataagggtgtttagggggtgatcaaattctataatccgaaaaaatgtaaggaac 18514792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 565 - 628
Target Start/End: Original strand, 37094241 - 37094304
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||||||||| ||||||| | | |||||| ||| ||||||||||||| |||||||||||    
T  37094241 aagagtattacttttcccaccctgttgacttctcgcgcgccctgtaaaattttcaaaaatgccc 37094304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 20892289 - 20892227
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||| ||| | ||||||| | || ||||||||||||||||||||||||||    
T  20892289 tattacttttcccacccaatgacattctcccacgccttgtaaaatttccaaaaatgcccttgt 20892227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 29863236 - 29863174
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| |||| ||||| |||||||||||||||| ||||||||  |||||||||||| ||||||    
T  29863236 tattatttttcccaccttatggccttctcccgcgccctgtaatttttccaaaaatgaccttgt 29863174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 34713034 - 34712940
Alignment:
Q  81 gcaaagtgttgtttaacagttatgagtagtattttgaaaacaagattttaggaataaaaaggagtatatgtgtcaaaaggagagtgtgaataaaa 175  Q
    |||||| |||||| || ||||| ||||||||||||||||| ||| ||| |  ||| | |||||||||||  || |||||||| ||||||||||||    
T  34713034 gcaaagagttgttcaaaagttaagagtagtattttgaaaagaaggtttcaaaaatgagaaggagtatatacgtaaaaaggagggtgtgaataaaa 34712940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 624
Target Start/End: Original strand, 37883128 - 37883182
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    |||||||||||||||||||| |||||||| ||| ||||| ||||||| |||||||    
T  37883128 tattactttttccaccctattgccttctcgcgcgccctgcaaaattttcaaaaat 37883182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 571 - 627
Target Start/End: Original strand, 24203168 - 24203224
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcc 627  Q
    ||||||||| ||||||| || ||||||||||| ||||  ||||||||||||||||||    
T  24203168 attacttttcccaccctgtgaccttctcccgcgccctacaaaatttccaaaaatgcc 24203224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 36339472 - 36339512
Alignment:
Q  567 gagtattactttttccaccctatggccttctcccgcaccct 607  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  36339472 gagtattactttttccaccctatggccttctcgcgcgccct 36339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 607
Target Start/End: Complemental strand, 18342177 - 18342134
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccct 607  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||    
T  18342177 taagagtattacttttcccaccctatggccttctcgcgcgccct 18342134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 625
Target Start/End: Original strand, 28624045 - 28624100
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatg 625  Q
    |||||||||| |||||||||| | |||||  ||||||||||||||||| |||||||    
T  28624045 tattacttttcccaccctatgacattctcatgcaccctgtaaaatttctaaaaatg 28624100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 31220782 - 31220845
Alignment:
Q  570 tattactttttccaccctatggccttctcccgc-accctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||||||||||  |||| |||| |  |||||||||||||||||||||||||||    
T  31220782 tattacttttcccaccctatggttttctgccgcgaatctgtaaaatttccaaaaatgcccttgt 31220845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 5535537 - 5535590
Alignment:
Q  349 gggtgtttaggggtgttcagattctataatccgaaaaagagtaaggaacacgccc 403  Q
    |||||||||||||||||| |||| ||||||| |||||| || |||||||||||||    
T  5535537 gggtgtttaggggtgttcggattttataatctgaaaaa-agcaaggaacacgccc 5535590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 13858408 - 13858368
Alignment:
Q  194 gccccgkattaggcctcctatttttgtctttgaaaatattt 234  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  13858408 gccccgtattaggcctcatatttttgtttttgaaaatattt 13858368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 13908637 - 13908549
Alignment:
Q  296 tgttgatacaatttggattaaagtatattccgaactatttatcccctaaataagggtgtttagg-ggtgttcagattctataatccgaaaaa 386  Q
    ||||||||||||| ||||||   |||| |||||||| ||| |||| | || ||| ||||||||| |||||||| ||| ||||||||||||||    
T  13908637 tgttgatacaattcggatta---tataatccgaactgtttttcccttgaaaaagagtgtttaggaggtgttcaaattatataatccgaaaaa 13908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 570 - 622
Target Start/End: Original strand, 27493694 - 27493746
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaa 622  Q
    ||||||||||| ||||||||||   |||| |||||||||||||||||| ||||    
T  27493694 tattacttttttcaccctatggtactctcacgcaccctgtaaaatttcaaaaa 27493746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 17474235 - 17474295
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttg 631  Q
    |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  17474235 tattacttttcccaccctatggccttctcccgcgccctgtaaaa-ttccaaaaatgcccttg 17474295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 33451901 - 33451963
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||| |||||||| ||||| ||||||| || |||||||||||||||||||||||||||||    
T  33451901 tattactatttccaccttatggtcttctccagcgccctgtaaaatttccaaaaatgcccttgt 33451963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 9846971 - 9847031
Alignment:
Q  566 agagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||| ||||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||    
T  9846971 agagaattacttttcccaccctattgccttctcgcgcgccctgtaaaatttccaaaaatgc 9847031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 4268055 - 4268122
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||||||||||||||| ||| ||||||||| ||  |||||||||||  ||||||||||||||    
T  4268055 aagagtattactttttccacccaatgaccttctcccacattctgtaaaatttttaaaaatgcccttgt 4268122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 521
Target Start/End: Original strand, 37773862 - 37774061
Alignment:
Q  326 cgaactatttatcccctaaataagggtgttta-ggggtgttcagattctataatccg-aaaaagagtaaggaacacgccc-nnnnnnngggatgttcgga 422  Q
    |||||| ||| ||| || |||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| |||||        | | | ||| ||    
T  37773862 cgaactgtttttcctctgaataagggtgtttaaggggtgttcagattctataatccgaaaaaaaaataaggaacgcgccctattttttgaggttttcaga 37773961  T
Q  423 ttattaaatccaaattgcagaaaactca-ttttccactccaaaacaaaggaaaaactcaatctaga-ttataaaatccaaaaattccatggacattttcg 520  Q
    ||||  |||||||||||  ||||||||| |||| ||| ||| ||||||||||| ||||||| | || || ||||||||||||||| ||||| ||||||||    
T  37773962 ttatagaatccaaattggtgaaaactcattttttcaccccataacaaaggaaacactcaat-tcgatttctaaaatccaaaaattgcatgggcattttcg 37774060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 577 - 628
Target Start/End: Complemental strand, 42895051 - 42895000
Alignment:
Q  577 ttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  42895051 ttttccaccctatggccttctcctgcgccctgtaaaattttcaaaaatgccc 42895000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 44465193 - 44465255
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| |||| ||||| ||||||||||||||||  ||| ||||||||||||||||||||||||    
T  44465193 tattagttttcccaccttatggccttctcccgcgacctttaaaatttccaaaaatgcccttgt 44465255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 571 - 632
Target Start/End: Complemental strand, 8451009 - 8450948
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||| |||||||||   ||||||||||  ||||||||||||||||||||||||||||    
T  8451009 attacttttaccaccctataatcttctcccgcgtcctgtaaaatttccaaaaatgcccttgt 8450948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 32187324 - 32187385
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||||| ||||||||| |||||    
T  32187324 attacttttcccactctatgaccttctcccgcgccctgtaaaattttcaaaaatgctcttgt 32187385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 33440546 - 33440599
Alignment:
Q  350 ggtgtttaggggtgttcagattctataatccgaaaaagagtaaggaacacgccc 403  Q
    ||||||||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  33440546 ggtgtttaggggtattcagattctataatccgaaaaaaatcaaggaacacgccc 33440599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 17766910 - 17766946
Alignment:
Q  350 ggtgtttaggggtgttcagattctataatccgaaaaa 386  Q
    |||||||||||||||||||||||||||||||||||||    
T  17766910 ggtgtttaggggtgttcagattctataatccgaaaaa 17766946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 45153344 - 45153406
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||||| |||| | ||| ||||||| ||| ||||||||||||| |||||||||||||||    
T  45153344 tattacttttcccactcaatgaccttctctcgcgccctgtaaaattttcaaaaatgcccttgt 45153406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 25715949 - 25715892
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||||||||||| | ||||||||  || || ||||||||||||||||||||||    
T  25715949 attactttttccaccctgttgccttctcgtgcgccttgtaaaatttccaaaaatgccc 25715892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 582 - 630
Target Start/End: Complemental strand, 5508111 - 5508063
Alignment:
Q  582 caccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||||||||||||||| |||||||| ||| |||||||| ||||    
T  5508111 caccctatggccttctcccgcatcctgtaaatttttcaaaaatgtcctt 5508063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 570 - 622
Target Start/End: Original strand, 16749887 - 16749939
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaa 622  Q
    |||||| ||| |||||||||| ||||||||||| ||||||||||||| |||||    
T  16749887 tattacctttcccaccctatgaccttctcccgcgccctgtaaaattttcaaaa 16749939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 564 - 632
Target Start/End: Complemental strand, 27671189 - 27671121
Alignment:
Q  564 taagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||| ||||| ||||| |||||||| |||||||| || |||| ||||| ||| |||||||||||||||    
T  27671189 taagactattatttttttcaccctattgccttctcacgtacccagtaaatttttcaaaaatgcccttgt 27671121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 14389691 - 14389736
Alignment:
Q  194 gccccgkattaggcctcctatttttgtctttgaaaatatttccgta 239  Q
    |||||| |||||||||| ||||||| ||||||||||||||| ||||    
T  14389691 gccccgtattaggcctcatatttttatctttgaaaatattttcgta 14389736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 632
Target Start/End: Original strand, 41854354 - 41854401
Alignment:
Q  585 cctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||| |||||||||| || ||||||||||||||||||| ||||||    
T  41854354 cctatggtcttctcccgcgccatgtaaaatttccaaaaatgtccttgt 41854401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 517
Target Start/End: Original strand, 32069434 - 32069500
Alignment:
Q  451 ttttccactccaaaacaaaggaaaaactcaatctagattataaaatccaaaaattccatggacattt 517  Q
    ||||||||||||||||||| | ||||||||||  ||||||||||||   |||||  |||||||||||    
T  32069434 ttttccactccaaaacaaaaggaaaactcaattcagattataaaatatgaaaatcacatggacattt 32069500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 38065013 - 38065078
Alignment:
Q  567 gagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||| ||||  |||||||||||||| |||| |||||| |||| ||| | |||||||||||||    
T  38065013 gagtattatttttctcaccctatggccttttccctcaccctataaatttttctaaaatgcccttgt 38065078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 11456903 - 11456863
Alignment:
Q  347 aagggtgtttaggggtgttcagattctataatccgaaaaag 387  Q
    |||| ||||||||||||| | ||||||||||||||||||||    
T  11456903 aaggatgtttaggggtgtcctgattctataatccgaaaaag 11456863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 27900679 - 27900747
Alignment:
Q  319 tatattccgaactatttatcccctaaataagggtgttta-ggggtgttcagattctataatccgaaaaa 386  Q
    |||| |||||||| ||| |||||| || ||||||||||| |||||||||  ||| ||||||||||||||    
T  27900679 tataatccgaactgtttttcccctgaagaagggtgtttagggggtgttcgaattttataatccgaaaaa 27900747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 386
Target Start/End: Complemental strand, 45293715 - 45293687
Alignment:
Q  358 ggggtgttcagattctataatccgaaaaa 386  Q
    |||||||||||||||||||||||||||||    
T  45293715 ggggtgttcagattctataatccgaaaaa 45293687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 570 - 625
Target Start/End: Complemental strand, 2540168 - 2540113
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatg 625  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  2540168 tattacttttcccaccctatggccttctcccgcgccctgtaaaattttcaaaaatg 2540113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 565 - 624
Target Start/End: Original strand, 17500867 - 17500926
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    ||||||||||||||| ||| ||||||||  |||| |||||||||||||||||||||||||    
T  17500867 aagagtattacttttcccatcctatggcagtctcacgcaccctgtaaaatttccaaaaat 17500926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 29520002 - 29519935
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||| ||| ||||||||||||| |||  ||||||| |||| ||||||||||||||    
T  29520002 aagagtattactttttctaccttatggccttctcctgcattctgtaaattttcaaaaaatgcccttgt 29519935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 565 - 626
Target Start/End: Complemental strand, 7423628 - 7423567
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||| ||||||||||||||| |||||| |||||||||| |||| |||||||| |||||||||    
T  7423628 aagactattactttttccactctatggtcttctcccgcgccctataaaattttcaaaaatgc 7423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 24603842 - 24603905
Alignment:
Q  567 gagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| ||| | |||||||||||||    
T  24603842 gagtattactttt-ccaccctatgaccttctcccgcaccctgtaaatttttc-aaaatgcccttgt 24603905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 1945023 - 1945083
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||||| ||||| |||| |||||||| |||| ||||||||||| |||||||||||||||    
T  1945023 ttacttttcccaccttatgaccttctcctgcacactgtaaaattttcaaaaatgcccttgt 1945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 7416503 - 7416436
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||| |||||||||||||||| ||||| ||||||||||  ||| |||||||| |||||||| ||||||    
T  7416503 aagactattactttttccaccttatggtcttctcccgcgtcctataaaattttcaaaaatgtccttgt 7416436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 10310453 - 10310532
Alignment:
Q  319 tatattccgaactatttatcccctaaataagggtgtttagggg-tgttcagattctataatccgaaaaagagtaaggaac 397  Q
    |||| |||||||| ||| | |||| |||||||||||||||||| ||||| ||||||||||||| ||||| | ||||||||    
T  10310453 tataatccgaactgttttttccctgaataagggtgtttagggggtgttcggattctataatccaaaaaaaaataaggaac 10310532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 585 - 632
Target Start/End: Complemental strand, 13096864 - 13096817
Alignment:
Q  585 cctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  13096864 cctatgaccttctcctgcaccctgtaaaatttccaaaaatgtccttgt 13096817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 624
Target Start/End: Complemental strand, 5700318 - 5700264
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaat 624  Q
    ||||||||||||||||||||| |||||||||||  |||||||  |||||||||||    
T  5700318 tattactttttccaccctatgaccttctcccgcgtcctgtaatttttccaaaaat 5700264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 571 - 628
Target Start/End: Complemental strand, 17501592 - 17501535
Alignment:
Q  571 attactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 628  Q
    ||||||||| ||||||||||||  |||| |||| | ||||||||||||||||||||||    
T  17501592 attacttttcccaccctatggcagtctcacgcatcttgtaaaatttccaaaaatgccc 17501535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 570 - 630
Target Start/End: Original strand, 14587005 - 14587065
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||| | || |||||||||||||||||  ||||||||||||| ||||||| ||||    
T  14587005 tattacttttccaactctatggccttctcccgcgtcctgtaaaatttctaaaaatgacctt 14587065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 23407425 - 23407365
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||||| ||||| |||||||||||||||| | ||||||  |||||||||||| ||||    
T  23407425 tattacttttaccaccttatggccttctcccgcgctctgtaatttttccaaaaatgtcctt 23407365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 384
Target Start/End: Complemental strand, 16450303 - 16450255
Alignment:
Q  337 tcccctaaataagggtgtttagggg-tgttcagattctataatccgaaa 384  Q
    |||||| |||||||||||||||||| |||||| ||||| ||||||||||    
T  16450303 tcccctgaataagggtgtttaggggatgttcaaattctttaatccgaaa 16450255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 521
Target Start/End: Original strand, 29631060 - 29631167
Alignment:
Q  415 tgttcggattattaaatccaaattgcagaaaa-ctcattttccactccaaaacaaaggaaaaactcaa-tctagattataaaatccaaaaattccatgga 512  Q
    |||||||||||| |||||| || ||  ||||| |||||||| |  |||||||||| | |||||||||| |||| |||||||||||| |||||  |||||     
T  29631060 tgttcggattataaaatccgaaatgatgaaaaactcatttttctatccaaaacaaggaaaaaactcaattcta-attataaaatccgaaaatctcatggg 29631158  T
Q  513 cattttcgt 521  Q
    |||||||||    
T  29631159 cattttcgt 29631167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 4502 - 4440
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||  ||||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  4502 tattacttttctcaccctatgaccttctcccgcgccctgtaaaattttcaaaaatgcccttgt 4440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 102806 - 102744
Alignment:
Q  570 tattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||  ||||||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  102806 tattacttttctcaccctatgaccttctcccgcgccctgtaaaattttcaaaaatgcccttgt 102744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 572 - 630
Target Start/End: Original strand, 205576 - 205634
Alignment:
Q  572 ttactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccctt 630  Q
    |||||||| || ||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  205576 ttacttttcccgccctatggccttctcgcgcgccctgtaaaattttcaaaaatgccctt 205634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 173817 - 173868
Alignment:
Q  581 ccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||| ||||    
T  173817 ccaccctatagccttctcccgcgccctgtaaaattttcaaaaatgccattgt 173868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 565 - 626
Target Start/End: Original strand, 141436 - 141497
Alignment:
Q  565 aagagtattactttttccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgc 626  Q
    |||| |||||||||| |||| |||||| |||||  || ||||||||||||||||||||||||    
T  141436 aagactattacttttcccactctatggtcttctttcgtaccctgtaaaatttccaaaaatgc 141497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 581 - 632
Target Start/End: Complemental strand, 141175 - 141124
Alignment:
Q  581 ccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgcccttgt 632  Q
    ||||||||||||||||| | || ||||||||||||| ||||||||| |||||    
T  141175 ccaccctatggccttctactgcgccctgtaaaattttcaaaaatgctcttgt 141124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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