View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598_high_11 (Length: 495)
Name: NF0598_high_11
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 56 - 482
Target Start/End: Original strand, 25892468 - 25892893
Alignment:
| Q |
56 |
aaaggttcgagaaatcttgagttggaatagttcattagtagttagtaagtcttgttatctctgcttttagtagtaatagttcattagtcccatggactct |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25892468 |
aaaggttcgagaaatcttgagttggaatagttcattagtagttagtaagtcttgttatctctgcttttagt---aatagttcattagtcccatggactct |
25892564 |
T |
|
| Q |
156 |
tcaaaataggtggcttaattgtattgagcttactcaaaatgtttatatattttctcatacttaaagagtgggcaacatgaaaatgaaagtactatagcat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
25892565 |
tcaaaataggtggcttaattgtattgagcttactcaaaatgtttatatattttctcatacttaaagaatgggcaacatgaaaatgaaagtactataacat |
25892664 |
T |
|
| Q |
256 |
aaatggaaaaactgattatgaaaagttataccttttccttatttaaattgcaacataggaaaagtaaattgtatatat--aaaaaacaacagtgctcgtt |
353 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25892665 |
aaatggaaaaactgattatgaaaagtaataccttttccttatttaaattgcaacataggaaaagtaaattgtatatataaaaaaaacaacagtgctcgtt |
25892764 |
T |
|
| Q |
354 |
gagtgactttcctcaaaaagtcatcaagaaataaatggcatggctgaaaatttccattcacttagttgcttccatcttcatattttagtgagaatcctct |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25892765 |
gagtgactttcctcaaaaagtcatcaagaaataaatggcatggctgaaaatttccattcacatagttgcttccatcttcatattttagtgagaatcctct |
25892864 |
T |
|
| Q |
454 |
tcaatacaataatcctatttgctccagaa |
482 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25892865 |
tcaatacaataatcctatttgctccagaa |
25892893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 25892393 - 25892446
Alignment:
| Q |
1 |
tggaaaatcttgtatatttagaatgcttttcatgctgaacttataagagctatgc |
55 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25892393 |
tggaaaatcttgg-tatttggaatgcttttcatgctgaacttataagagctatgc |
25892446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 751 times since January 2019
Visitors: 3837