View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598_high_12 (Length: 486)
Name: NF0598_high_12
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 30 - 476
Target Start/End: Original strand, 30836580 - 30837008
Alignment:
| Q |
30 |
atatcaataactggaatttcaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttc |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836580 |
atatcaataactggaatttgaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttc |
30836679 |
T |
|
| Q |
130 |
catctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccattttctttgttattaattcgcaatgtatata |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836680 |
catctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccattttctttgttattaattcgcaatgtatata |
30836779 |
T |
|
| Q |
230 |
acaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgcaaaccgcatgaaatttgtttggatcgatcaagtcccaccgcatc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836780 |
acaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgcaaaccgcatgaaatttgtttggatcgatcaagtcccaccgcatc |
30836879 |
T |
|
| Q |
330 |
aattgttttaaacatagaaaatattttgtttgaatcttgatcgatttgacatatgtaatatggaggactagaggtcatcaatcatcctctccctacttcg |
429 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836880 |
aattg------------------ttttgtttgaatcttgatagatttgacatatgtaatatggaggactagaggtcatcaatcatcctctccctacttcg |
30836961 |
T |
|
| Q |
430 |
aattttgtctgttttaacattttgtttccattcattttctccctatg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30836962 |
aattttgtctgttttaacattttgtttccattcattttctccctatg |
30837008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 30831154 - 30831313
Alignment:
| Q |
30 |
atatcaataactggaatttcaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttc |
129 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30831154 |
atatcaataactggaatttgaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatctttc |
30831253 |
T |
|
| Q |
130 |
catctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttga |
189 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
30831254 |
catctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttga |
30831313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 30854395 - 30854496
Alignment:
| Q |
95 |
ctgaatgtatcttggtggaacggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattcct |
194 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||| || |||| |||||||||||||||||||||| ||||||||| || || ||||||||||| || |
|
|
| T |
30854395 |
ctgaatatatcttggtggaactgttgaaattttt---tccttagccaactcttgaactgatggtaccagaagagaagttccagaggggttcttgatctct |
30854491 |
T |
|
| Q |
195 |
tccat |
199 |
Q |
| |
|
||||| |
|
|
| T |
30854492 |
tccat |
30854496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 30841817 - 30841984
Alignment:
| Q |
30 |
atatcaataactggaatttcaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttc |
129 |
Q |
| |
|
||||||||||||||||||||||| || ||| | ||||| || | ||| |||| ||| | || |||||| ||||||| |||||| |||||||| ||| |
|
|
| T |
30841817 |
atatcaataactggaatttcaagtatactattagcttcattgatgaccaattcttcatgttgagactgaatatatcttgctggaactgttgaaatcttt- |
30841915 |
T |
|
| Q |
130 |
catctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccatt |
200 |
Q |
| |
|
|| |||| || ||||| ||||||||||||| ||||||||| || || ||||||||||| |||||||| |
|
|
| T |
30841916 |
--tccttagccaattcttggactgatggtaccagaagagaagttccagaggggttcttgatctcttccatt |
30841984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 499 times since January 2019
Visitors: 3834