View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_13 (Length: 465)
Name: NF0598_high_13
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_13 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 44 - 465
Target Start/End: Complemental strand, 33411116 - 33410699
Alignment:
| Q |
44 |
acacacacacatgacaactatatata------gcctaagttgatatgcacaattcatcaaatcaaatcaaaacaataacatttgctaacttgctattcct |
137 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33411116 |
acacacacacatgacaactatatatatatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaattacatttgctaacttgctattcct |
33411017 |
T |
|
| Q |
138 |
ttgattgagattttattctaggaaataaaattttgacactcannnnnnnaaagttaatttctacacttagagataaatattttccaaactcaaattttga |
237 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
33411016 |
ttgattgagattttattctaggaaataaaattttgacactcatttttttaaagttaattt----------agagaaatattttccaaactcaaattttga |
33410927 |
T |
|
| Q |
238 |
tcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaag |
337 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410926 |
tcaaatggcttcttctcgtgtagttttgatcctttctatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaag |
33410827 |
T |
|
| Q |
338 |
ggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatcc |
437 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33410826 |
ggttggaccgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatcc |
33410727 |
T |
|
| Q |
438 |
atttggcttcatatttaattgtttaact |
465 |
Q |
| |
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|||||| |||||||| |||||||||||| |
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| T |
33410726 |
atttggtttcatattcaattgtttaact |
33410699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 44 - 448
Target Start/End: Complemental strand, 33425035 - 33424633
Alignment:
| Q |
44 |
acacacacacatgacaactatatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaataacatttgctaacttgctattcctttgatt |
143 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33425035 |
acacccacacatgacaactatatatagcctaagttgatatgcacaattcatcaaatcaaatcaaaacaattacatttgctaacttgctattcctttgatt |
33424936 |
T |
|
| Q |
144 |
gagattttattctaggaaataaaattttgacactcannnnnnnaaagttaatttctacacttagagataaatattttccaaactcaaattttgatcaaat |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |
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| T |
33424935 |
gagattttattctaggaaataaaattttgacactcatttttttaaagttaatttctacatttagagagaaatattttccaaaatcaaattttgatcaaat |
33424836 |
T |
|
| Q |
244 |
ggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttgg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424835 |
ggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttgg |
33424736 |
T |
|
| Q |
344 |
actgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatgtaataaaaggaaaaaacaaatatccatttgg |
443 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||| | ||||||| |
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| T |
33424735 |
accgttgattttgattacactcaatgggctcaagacaaagttttccgtgttggagacaacttaggtatgta--aaagggaaaaaacaaattttcatttgg |
33424638 |
T |
|
| Q |
444 |
cttca |
448 |
Q |
| |
|
|||| |
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|
| T |
33424637 |
tttca |
33424633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 116 - 448
Target Start/End: Complemental strand, 33416900 - 33416563
Alignment:
| Q |
116 |
catttgctaacttgctattcctttgattgagattttat--tctagg----aaataaaattttgacactcannnnnnnaaagttaatttctacacttagag |
209 |
Q |
| |
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||||||||| || ||||||| ||||||||||||||||| |||||| ||| ||||| |||||||||| || ||||||||||||| |||||| |
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| T |
33416900 |
catttgctagctagctattcttttgattgagattttatattctagggagaaaaaaaaatcttgacactcatttttttaa-gttaatttctacaattagag |
33416802 |
T |
|
| Q |
210 |
ataaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaat--- |
306 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416801 |
agaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgc |
33416702 |
T |
|
| Q |
307 |
tgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatcta |
406 |
Q |
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|
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
33416701 |
tgcaactgattatattgttggtgatgacaagggttggaccgttgattttgattacactcaatgggctcaagacaaagtttttcgtgttggagacaaccta |
33416602 |
T |
|
| Q |
407 |
ggtatgtaataaaaggaaaaaacaaatatccatttggcttca |
448 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||| |||| |
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| T |
33416601 |
ggtatg---taaaaggaaaaaataaatgtccatttggtttca |
33416563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 275 - 412
Target Start/End: Complemental strand, 33436903 - 33436766
Alignment:
| Q |
275 |
atttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctc |
374 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||| |
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| T |
33436903 |
atttcaatggttttgctttcttcagttgcaatggcagccgatcacattgttggtgatgacaagggttggactgttgattttaactatactcagtggactc |
33436804 |
T |
|
| Q |
375 |
aagacaaagtttttcgtgttggagacaatctaggtatg |
412 |
Q |
| |
|
| ||||| ||||| |||||||| ||||| || |||||| |
|
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| T |
33436803 |
aggacaaggttttccgtgttggtgacaaccttggtatg |
33436766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 415
Target Start/End: Original strand, 33427829 - 33427931
Alignment:
| Q |
313 |
tgatcacattgttggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaatctaggtatg |
412 |
Q |
| |
|
|||||| ||||| ||||||||||| || |||||| || | || |||||||||| ||||| |||||||||||||||||||||| |||||||| |||||| |
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|
| T |
33427829 |
tgatcatattgtgggtgatgacaatggctggactattaacttcaattacactcaatgggcgtaagacaaagtttttcgtgttggtgacaatcttggtatg |
33427928 |
T |
|
| Q |
413 |
taa |
415 |
Q |
| |
|
||| |
|
|
| T |
33427929 |
taa |
33427931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 315
Target Start/End: Original strand, 33427546 - 33427669
Alignment:
| Q |
191 |
ttaatttctacacttag-agataaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggtttta |
289 |
Q |
| |
|
|||||||| | |||||| ||| |||||| || ||||| ||||||||||||||||| |||||||||| | |||||||| | ||||| ||||||||| |
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|
| T |
33427546 |
ttaatttccatacttaggagagaaatatatttcaaacctaaattttgatcaaatggg--cttctcgtgtgttcttgatcctagctatttcaatggtttta |
33427643 |
T |
|
| Q |
290 |
ctttcatcagttgcaattgcaactga |
315 |
Q |
| |
|
|||| ||||||||||| || ||||| |
|
|
| T |
33427644 |
ttttcctcagttgcaatggctactga |
33427669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 402
Target Start/End: Original strand, 24984670 - 24984844
Alignment:
| Q |
225 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
324 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
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|
| T |
24984670 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24984766 |
T |
|
| Q |
325 |
tggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaa |
402 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||||| ||||| |
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|
| T |
24984767 |
gggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaa |
24984844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 402
Target Start/End: Original strand, 24990500 - 24990674
Alignment:
| Q |
225 |
actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt |
324 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||| | | | |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| |||| |
|
|
| T |
24990500 |
actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt |
24990596 |
T |
|
| Q |
325 |
tggtgatgacaagggttggactgttgattttgattacactcagtgggctcaagacaaagtttttcgtgttggagacaa |
402 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | |||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24990597 |
gggtgatgaaaagggttggaccgttgatttcaactacactcaatgggcccaagacaaagtttttcgtgttggtgacaa |
24990674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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