View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_high_2 (Length: 693)

Name: NF0598_high_2
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_high_2
NF0598_high_2
[»] chr4 (4 HSPs)
chr4 (30-370)||(13118228-13118560)
chr4 (473-678)||(13118750-13118955)
chr4 (426-486)||(13118670-13118730)
chr4 (624-656)||(47878314-47878346)
[»] chr2 (2 HSPs)
chr2 (36-96)||(21013386-21013445)
chr2 (621-656)||(2911314-2911349)
[»] chr1 (1 HSPs)
chr1 (621-669)||(17588789-17588837)
[»] chr8 (1 HSPs)
chr8 (621-658)||(10406450-10406487)
[»] chr5 (2 HSPs)
chr5 (621-658)||(578567-578604)
chr5 (624-656)||(32555352-32555384)
[»] chr7 (1 HSPs)
chr7 (621-657)||(39708381-39708417)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 13118228 - 13118560
Alignment:
Q  30 atatatacctctaaaactttctttatatctaacaaaaatcaaaacttcaacttttcaataaaacatttaataaaatccctctattttactcagaaattca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||    
T  13118228 atatatacctctaaaactttctttatatctaacaaaaatcaaaacttcaatttttcaataaaacattcaataaaatccctctattttactaagaaattca 13118327  T
Q  130 gtaaaatataaaagaaacacatggaaacaaaatagattttgcagaaaaagccatt-aagaaaacagaagaaatgttgaatcaatgagacccatgaaatag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13118328 gtaaaatataaaagaaacacatggaaacaaaatagattttgcagaaaaagccattaaagaaaacagaagaaatgttgaatcaatgagacccatgaaatag 13118427  T
Q  229 aaaagaacaataaaaggatgagtgagaaagggtgcattaccattccaacgtttggtttttgttttggtgtgagagaggacaaaggctagggttcagttca 328  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  13118428 aaaagaacaataaaagg----gtgagaaagggtgcattaccattccaacgtttggtttttgttttggtgtgagagaggacaaaggctagg-----gttca 13118518  T
Q  329 ccaggaaaatatatttcgtacagtgcgagagtttcaacagag 370  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  13118519 ccaggaaaatatatttcgtacagtgcgagagcttcaacagag 13118560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 473 - 678
Target Start/End: Original strand, 13118750 - 13118955
Alignment:
Q  473 attgtataaaaatgacaatgacaagaaatataagttatggtgtagcacattatgtaatttcgctacgggatgagtttgcaccatccctcactatcatgtt 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  13118750 attgtataaaaatgacaatgacaagaaatataagttatggtgtagcacattatgtaattccgctacgggatgagtttgcaccaaccctcactatcatgtt 13118849  T
Q  573 attcgaaagatttgattttgatattcaaaagagtttgctattcgatcggaacaaaagagagaattagatgagatttaggaatttagtttttgtttttagc 672  Q
    ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13118850 attagaaagatttgattttgatattcaaaagagtttgatatttgatcggaacaaaagagagaattagatgagatttaggaatttagtttttgtttttagc 13118949  T
Q  673 tctgat 678  Q
    ||||||    
T  13118950 tctgat 13118955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 486
Target Start/End: Original strand, 13118670 - 13118730
Alignment:
Q  426 cgtttaatcgttgacgttaaaaacatttgttaacggatgaggtgacaattgtataaaaatg 486  Q
    |||| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||    
T  13118670 cgttaaatctttgacgttaaaaacgttcgttaacggatgaggtgacaattgtataaaaatg 13118730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 656
Target Start/End: Original strand, 47878314 - 47878346
Alignment:
Q  624 caaaagagagaattagatgagatttaggaattt 656  Q
    |||||||||||||||||||||||||||| ||||    
T  47878314 caaaagagagaattagatgagatttagggattt 47878346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 21013445 - 21013386
Alignment:
Q  36 acctctaaaactttctttatatctaacaaaaatcaaaacttcaacttttcaataaaacatt 96  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21013445 acctctaaaacttt-tttatatctaacaaaaatcaaaacttcaaattttcaataaaacatt 21013386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 656
Target Start/End: Original strand, 2911314 - 2911349
Alignment:
Q  621 gaacaaaagagagaattagatgagatttaggaattt 656  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2911314 gaacaaaagagagaattagatgacatttaggaattt 2911349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 669
Target Start/End: Complemental strand, 17588837 - 17588789
Alignment:
Q  621 gaacaaaagagagaattagatgagatttaggaatttagtttttgttttt 669  Q
    ||||||||||||| |||| |||||||||||| |||||| ||||||||||    
T  17588837 gaacaaaagagaggattaaatgagatttagggatttaggttttgttttt 17588789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 10406487 - 10406450
Alignment:
Q  621 gaacaaaagagagaattagatgagatttaggaatttag 658  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  10406487 gaacaaaagagagaattagatgacatttagggatttag 10406450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 658
Target Start/End: Original strand, 578567 - 578604
Alignment:
Q  621 gaacaaaagagagaattagatgagatttaggaatttag 658  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  578567 gaacaaaagagggaattagatgagatttagggatttag 578604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 656
Target Start/End: Original strand, 32555352 - 32555384
Alignment:
Q  624 caaaagagagaattagatgagatttaggaattt 656  Q
    |||||||||||||||||||||||||||| ||||    
T  32555352 caaaagagagaattagatgagatttagggattt 32555384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 657
Target Start/End: Complemental strand, 39708417 - 39708381
Alignment:
Q  621 gaacaaaagagagaattagatgagatttaggaattta 657  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  39708417 gaacaaaagagagaattagatgacatttaagaattta 39708381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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