View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_high_20 (Length: 392)

Name: NF0598_high_20
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_high_20
NF0598_high_20
[»] chr1 (25 HSPs)
chr1 (30-392)||(6602024-6602386)
chr1 (29-133)||(15579458-15579562)
chr1 (287-389)||(6592775-6592879)
chr1 (32-194)||(10439665-10439827)
chr1 (32-141)||(44031981-44032090)
chr1 (32-141)||(44422678-44422787)
chr1 (94-190)||(32515374-32515470)
chr1 (29-126)||(4549206-4549303)
chr1 (32-133)||(6292472-6292573)
chr1 (32-141)||(25479560-25479669)
chr1 (53-133)||(27140478-27140558)
chr1 (33-125)||(33722399-33722491)
chr1 (32-87)||(4363668-4363723)
chr1 (94-133)||(28689442-28689481)
chr1 (32-130)||(12477280-12477378)
chr1 (98-192)||(15581299-15581393)
chr1 (40-133)||(33759557-33759650)
chr1 (32-113)||(34179882-34179963)
chr1 (96-141)||(38170672-38170717)
chr1 (45-133)||(4768819-4768907)
chr1 (33-121)||(6279379-6279467)
chr1 (94-194)||(12564428-12564528)
chr1 (45-113)||(14629976-14630044)
chr1 (97-141)||(27145965-27146009)
chr1 (32-140)||(33723365-33723473)
[»] chr5 (16 HSPs)
chr5 (32-142)||(10272412-10272522)
chr5 (32-141)||(14295485-14295594)
chr5 (33-129)||(32408586-32408682)
chr5 (34-113)||(16944993-16945072)
chr5 (34-133)||(41957441-41957540)
chr5 (29-118)||(12975323-12975411)
chr5 (96-141)||(18700427-18700472)
chr5 (29-141)||(13604831-13604943)
chr5 (54-138)||(17258868-17258952)
chr5 (26-90)||(29054881-29054945)
chr5 (32-139)||(16889714-16889821)
chr5 (94-133)||(17369429-17369468)
chr5 (164-194)||(1084068-1084098)
chr5 (94-140)||(10280582-10280627)
chr5 (53-126)||(11707055-11707128)
chr5 (94-138)||(4273362-4273406)
[»] chr6 (15 HSPs)
chr6 (32-127)||(281844-281939)
chr6 (34-118)||(31671079-31671163)
chr6 (94-133)||(7785734-7785773)
chr6 (36-195)||(28088151-28088309)
chr6 (32-90)||(18264308-18264366)
chr6 (32-141)||(3155155-3155263)
chr6 (72-133)||(34939763-34939824)
chr6 (26-78)||(24782032-24782084)
chr6 (40-139)||(2027390-2027489)
chr6 (94-141)||(20377902-20377949)
chr6 (95-194)||(30863288-30863387)
chr6 (32-85)||(22691558-22691611)
chr6 (32-65)||(22742345-22742378)
chr6 (38-133)||(1275134-1275230)
chr6 (97-141)||(1669780-1669824)
[»] chr3 (11 HSPs)
chr3 (38-140)||(20502051-20502153)
chr3 (30-89)||(33306757-33306816)
chr3 (26-129)||(52440656-52440759)
chr3 (94-138)||(30923883-30923927)
chr3 (72-136)||(36200115-36200179)
chr3 (94-141)||(42817204-42817251)
chr3 (94-140)||(41724253-41724299)
chr3 (62-139)||(9279310-9279387)
chr3 (38-123)||(16990161-16990246)
chr3 (72-141)||(27290883-27290952)
chr3 (94-135)||(42039203-42039244)
[»] chr2 (10 HSPs)
chr2 (34-139)||(680484-680589)
chr2 (37-126)||(15866665-15866754)
chr2 (32-133)||(43141850-43141951)
chr2 (32-140)||(40158697-40158805)
chr2 (55-139)||(41817170-41817254)
chr2 (38-141)||(5759557-5759660)
chr2 (94-140)||(787373-787419)
chr2 (164-194)||(1830150-1830180)
chr2 (39-141)||(12215793-12215895)
chr2 (33-78)||(22681230-22681275)
[»] chr8 (9 HSPs)
chr8 (94-194)||(6950363-6950463)
chr8 (53-133)||(11188145-11188225)
chr8 (53-141)||(11569439-11569527)
chr8 (52-192)||(30191072-30191212)
chr8 (94-141)||(30259155-30259202)
chr8 (34-140)||(4558779-4558885)
chr8 (36-65)||(5349651-5349680)
chr8 (52-133)||(42215296-42215377)
chr8 (109-141)||(26473734-26473766)
[»] chr4 (12 HSPs)
chr4 (32-126)||(54325034-54325128)
chr4 (94-141)||(3176086-3176133)
chr4 (29-132)||(30207562-30207665)
chr4 (94-137)||(50800016-50800059)
chr4 (34-112)||(51630092-51630170)
chr4 (46-127)||(6978958-6979039)
chr4 (36-133)||(8422830-8422926)
chr4 (96-133)||(19304969-19305006)
chr4 (32-133)||(23819068-23819169)
chr4 (36-133)||(29263353-29263450)
chr4 (32-192)||(2996552-2996712)
chr4 (32-192)||(21157747-21157907)
[»] scaffold0024 (1 HSPs)
scaffold0024 (32-141)||(27555-27664)
[»] scaffold0311 (1 HSPs)
scaffold0311 (94-141)||(10599-10646)
[»] chr7 (8 HSPs)
chr7 (94-141)||(33894668-33894715)
chr7 (51-129)||(6552286-6552364)
chr7 (32-77)||(5369737-5369782)
chr7 (94-191)||(12242285-12242382)
chr7 (104-141)||(33645943-33645980)
chr7 (33-78)||(38010694-38010739)
chr7 (104-140)||(1645683-1645719)
chr7 (38-126)||(44151477-44151565)
[»] scaffold0147 (1 HSPs)
scaffold0147 (95-140)||(12687-12732)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 392
Target Start/End: Complemental strand, 6602386 - 6602024
Alignment:
Q  30 aatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 129  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602386 aatcaaattgttttcatatatgctataagctattttcataaactatcccgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 6602287  T
Q  130 gtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtctgtagtttttatgcaaattaatgcctttatagaag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6602286 gtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtcggtagtttttatgcaaattaatgcctttatagaag 6602187  T
Q  230 agataaacaatacttgtaactatagcattttgttatttgaattcagagaagttaaaataacctattttgttttctgattcttggatcttttgtctgaata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602186 agataaacaatacttgtaactatagcattttgttatttgaattcagagaagttaaaataacctattttgttttctgattcttggatcttttgtctgaata 6602087  T
Q  330 tatctaaagagaagtgaacaatcccagtctccttgcgtaacggatgcggagcccgatagaatt 392  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602086 tatctaaagagaagggaacaatcccagtctccttgcgtaacggatgcggagcccgatagaatt 6602024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 15579458 - 15579562
Alignment:
Q  29 aaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagc 128  Q
    |||||||||||||||||| || |||||||||| || || ||| ||||| ||| |||||||||   ||||||||| |||||||||| |||||||||||||     
T  15579458 aaatcaaattgttttcatgtaagctataagctgttctcgtaagctatcatgttgagtttatggaaataagctgagaacaacttatggacatgtcataagt 15579557  T
Q  129 tgttt 133  Q
    |||||    
T  15579558 tgttt 15579562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 389
Target Start/End: Complemental strand, 6592879 - 6592775
Alignment:
Q  287 taacctattttgttttctgattcttggatcttttgtctgaatatatcta--aagagaagtgaacaatcccagtctccttgcgtaacggatgcggagcccg 384  Q
    ||||||| |||||||||||| | |||||  |||||||||| ||||||||  |||||||| ||||| |||||||||||||||||| | || | ||||||||    
T  6592879 taacctaatttgttttctgaatattggagtttttgtctgactatatctatgaagagaagagaacagtcccagtctccttgcgtatcagacgaggagcccg 6592780  T
Q  385 ataga 389  Q
    |||||    
T  6592779 ataga 6592775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 10439665 - 10439827
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||| |||||||||| ||||| |||||| |||  ||||||||||| ||||||||||   ||||||||| | ||  |||| |||||||||||   |||    
T  10439665 tcaaattattttcatataagctatcagctatattcaaaaactatcctggagagtttatggaaataagctgaaagcagattatggacatgtcatagtttgt 10439764  T
Q  132 ttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtc 194  Q
    || |||||||  | ||||| | ||| | |||| |||||| |  ||||||| ||||||||||||    
T  10439765 tttcataagctctcccaaatagtctcacaagatcttatggccataaataagctcaaataagtc 10439827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 44032090 - 44031981
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    |||||||||||||||||| ||||||| |||||||| |||  |||| || |||| |||||   || |||||| || | ||||| |||||||||| |||||     
T  44032090 tcaaattgttttcatataagctataaactattttcttaagttatcttgaagagcttatggaaattagctgaaaatagcttatggacatgtcattagctgc 44031991  T
Q  132 ttacataagc 141  Q
    ||||||||||    
T  44031990 ttacataagc 44031981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 44422678 - 44422787
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| |||||||||||| |||||||||||||||  ||| |||||||| |||| |||||   ||||||||    || ||||| ||||||||||||||| |    
T  44422678 tcaaactgttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagctgtagtcagcttatggacatgtcataagctat 44422777  T
Q  132 ttacataagc 141  Q
    || |||||||    
T  44422778 tttcataagc 44422787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 32515470 - 32515374
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaata 190  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||  | ||||| | ||| | ||| |||||||| |||| |||||||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 4549206 - 4549303
Alignment:
Q  29 aaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 126  Q
    |||| ||||| |||| ||||| ||||||||||  ||||  ||||||||| | | || |||||   ||||||||| |||||||||||||||||||||||    
T  4549206 aaataaaattctttttatataagctataagctgctttcacaaactatccaggatagcttatggaaataagctgaaaacaacttatagacatgtcataa 4549303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 6292472 - 6292573
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||| |||||| |||   |||||||||||||| ||||||||  || |||| |||||   ||||||||| |||| |||||  ||||||||||||||||    
T  6292472 tcaaattattttcacataacttataagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgt 6292571  T
Q  132 tt 133  Q
    ||    
T  6292572 tt 6292573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 25479560 - 25479669
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||||| |||||||| |||||||| | ||||| ||| |||||||  |||| |||||   ||||||||| ||||||| ||  ||||||||||| || |    
T  25479560 tcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctat 25479659  T
Q  132 ttacataagc 141  Q
    || |||||||    
T  25479660 tttcataagc 25479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 27140478 - 27140558
Alignment:
Q  53 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||||| ||||  ||| ||||| || |||| |||||   ||||||||| |||||||||| |||||||||||||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 33722491 - 33722399
Alignment:
Q  33 caaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcata 125  Q
    |||||||| ||||||||| ||| ||||| ||||| |||  ||||||  |||| |||||   ||||||||| ||||||||||||| ||||||||    
T  33722491 caaattgtgttcatatatactacaagcttttttcataagttatcctacagaggttatggaaataagctgaaaacaacttatagatatgtcata 33722399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 4363723 - 4363668
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagttt 87  Q
    ||||| |||||||||||| ||||||| |||||||| ||| |||||||| |||||||    
T  4363723 tcaaactgttttcatataagctataacctattttcataagctatcctgaagagttt 4363668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 28689481 - 28689442
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  28689481 ataagctgaaaacaacttatggacatgtcataagctgttt 28689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 12477378 - 12477280
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctg 130  Q
    ||||| ||||||||| || | |||| ||| ||||  ||| ||||| || ||||| ||||   ||||||||| |||||||||| ||||||||||||||||    
T  12477378 tcaaactgttttcatgtaagatatatgcttttttaataagctatcatggagagtgtatggaaataagctgaaaacaacttatggacatgtcataagctg 12477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 15581299 - 15581393
Alignment:
Q  98 gctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataag 192  Q
    ||||| |||| ||||||||||||||||||| ||||| ||| |||  | ||||| | ||| | ||| ||||||||||||| |||| || |||||||    
T  15581299 gctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataag 15581393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 33759557 - 33759650
Alignment:
Q  40 ttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||||||||| |||||||||||||| ||||||||| || |||  |||||   |||| | ||||||| ||| | ||||||| ||| |||||||    
T  33759557 ttttcatatatgttataagctattttcgtaaactatcttggagatcttatggaaataaacagataacagcttgtggacatgttataggctgttt 33759650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 34179963 - 34179882
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttat 113  Q
    |||||||||||| || || ||||||| || ||||| |||||||||||| | ||||||||   ||| ||||| ||||||||||    
T  34179963 tcaaattgttttaatctaagctataaactgttttcataaactatcctgaaaagtttatggaaatacgctgaaaacaacttat 34179882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 38170717 - 38170672
Alignment:
Q  96 aagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    ||||||| ||||||||||  |||||||||||||||||| |||||||    
T  38170717 aagctgaaaacaacttatgaacatgtcataagctgttttcataagc 38170672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 4768907 - 4768819
Alignment:
Q  45 atatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||||||| ||||||||||| ||   |||| || ||| ||||||   ||||||||| ||||| |||| |||||||| ||||||||||    
T  4768907 atatatgctagaagctattttcatatgatatcttggagaatttatggaaataagctgaaaacaagttatggacatgtcgtaagctgttt 4768819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 6279379 - 6279467
Alignment:
Q  33 caaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgt 121  Q
    |||||||||||| |||| ||| ||| |||||||| ||| |||||||  |||| |||||   ||| ||||| |||||||||| |||||||    
T  6279379 caaattgttttcgtataagctttaaactattttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 12564528 - 12564428
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagt 193  Q
    ||||||||| |||||||||| ||| ||||||||||| | ||| |||||  | ||||| | ||  | ||| |||||| |||||| |||| |||||||||||    
T  12564528 ataagctgaaaacaacttattgacttgtcataagctatatacgtaagctctcccaaacagtcacacaagtgcttatatcagtatataagctcaaataagt 12564429  T
Q  194 c 194  Q
    |    
T  12564428 c 12564428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 14630044 - 14629976
Alignment:
Q  45 atatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttat 113  Q
    ||||| |||||||||||||||| ||| ||||| || ||| ||||||   ||||||||| ||||||||||    
T  14630044 atataagctataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttat 14629976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 27145965 - 27146009
Alignment:
Q  97 agctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||||| || ||||||| ||||||||||||||||||| |||||||    
T  27145965 agctgaaaataacttatggacatgtcataagctgtttccataagc 27146009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 33723473 - 33723365
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||||||||||||||  |||| | || ||||| ||| ||| |||||| || |||||   ||||||||| |||| || ||  ||||||||| ||||||    
T  33723473 tcaaattgttttcatataaactatgaactgttttcataagctaccctgtaaagcttatggaaataagctgaaaacatctcatgaacatgtcatgagctgt 33723374  T
Q  132 ttacataag 140  Q
    || ||||||    
T  33723373 ttccataag 33723365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 10272522 - 10272412
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||||||||| |||| |||||||| | ||||| ||| | ||| || ||||||||||   ||||||||| ||||||||| |||||||||||||| |||    
T  10272522 tcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgt 10272423  T
Q  132 ttacataagca 142  Q
    ||  |||||||    
T  10272422 ttctataagca 10272412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 14295485 - 14295594
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| |||||||||||| |||||||||| ||||| ||| |||||||| |||| || |     |||||||| |||| ||||| ||||| |||||||||||    
T  14295485 tcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaacagcttatcgacatatcataagctgt 14295584  T
Q  132 ttacataagc 141  Q
    || |||||||    
T  14295585 tttcataagc 14295594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 32408682 - 32408586
Alignment:
Q  33 caaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 129  Q
    |||||| |||||||||| ||||||| |||||||| ||| |||||||| |||| |||||   |||||| || | |||||||  |||||||||||||||    
T  32408682 caaattattttcatataagctataaactattttcataagctatcctgaagagcttatggaaataagcagaaaccaacttacggacatgtcataagct 32408586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 16945072 - 16944993
Alignment:
Q  34 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttat 113  Q
    |||||||||||||| | |||||||||||||||| | |||||||||| |||| ||| ||  ||||||||| |||| |||||    
T  16945072 aaattgttttcatagaagctataagctattttcattaactatcctgaagagcttaagtaaataagctgaaaacagcttat 16944993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 41957540 - 41957441
Alignment:
Q  34 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||||||||||| || | |||||||| ||||| ||| |||||||  |||  |||||   ||||| ||| |||||||||| |||||||||||||||||||    
T  41957540 aaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgttt 41957441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 12975323 - 12975411
Alignment:
Q  29 aaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagaca 118  Q
    ||||||||||||||||||||| |||||||||| | ||| ||| ||||| || |||| ||||| | ||||| ||| |||||||||| ||||    
T  12975323 aaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagcttatg-gaataagttgaaaacaacttatggaca 12975411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 18700427 - 18700472
Alignment:
Q  96 aagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||    
T  18700427 aagctgaaaacaacttatagacatgtcataagttgtttccataagc 18700472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 13604943 - 13604831
Alignment:
Q  29 aaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagc 128  Q
    |||||| | ||||||||||||  || |||||| ||||| |||  |||| || |||| |||||   ||||| ||| |||||| ||| ||||||||||||||    
T  13604943 aaatcataatgttttcatataaactttaagctgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagc 13604844  T
Q  129 tgtttacataagc 141  Q
    ||||| |||||||    
T  13604843 tgttttcataagc 13604831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 17258952 - 17258868
Alignment:
Q  54 ataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacata 138  Q
    ||||||| ||||| |||||||||||| |||| |||||   ||||||||| |||| |||||  |||||||||||||| ||| ||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcata 17258868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 29054881 - 29054945
Alignment:
Q  26 atcaaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatg 90  Q
    |||||||||||||| ||||||||| |||||||| | ||| | ||||||||| ||||||| |||||    
T  29054881 atcaaatcaaattgctttcatataagctataagttgtttccataaactatcatgtagagcttatg 29054945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 16889714 - 16889821
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| |||||| ||| | |||||||||| ||||| ||| |||| ||  ||||||||||   |||| |||| ||||||||||||||||   |||||||||    
T  16889714 tcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatggaaataatctgaaaacaacttatagacatagtataagctgt 16889813  T
Q  132 ttacataa 139  Q
    || |||||    
T  16889814 tttcataa 16889821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 17369468 - 17369429
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  17369468 ataatctgaaaacaacttatagacatgtcataagctgttt 17369429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 1084098 - 1084068
Alignment:
Q  164 gcttatgtcagtaaataaactcaaataagtc 194  Q
    |||||||||||||||||||||||||||||||    
T  1084098 gcttatgtcagtaaataaactcaaataagtc 1084068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 10280627 - 10280582
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataag 140  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  10280627 ataagctgataacaacttatggacat-tcataagctgtttccataag 10280582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 11707055 - 11707128
Alignment:
Q  53 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 126  Q
    |||||||| ||||| ||| ||||| ||||||| || ||   ||||||||| ||||||||||| |||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 4273406 - 4273362
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacata 138  Q
    ||||| ||| ||||||||||||||| |||||||||||||| ||||    
T  4273406 ataagttgaaaacaacttatagacaagtcataagctgtttccata 4273362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 281939 - 281844
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataag 127  Q
    |||| ||||||||||||| |||||||||| | ||| ||| |||||||  |||| | |||   ||||||||| ||||||||||||||||||||||||    
T  281939 tcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataag 281844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 31671163 - 31671079
Alignment:
Q  34 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagaca 118  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||  | || |||||   ||||||||| ||||||| |||||||    
T  31671163 aaattgttttcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaacaactgatagaca 31671079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 7785773 - 7785734
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7785773 ataagctgaaaacaacttatagacatgtcataagctgttt 7785734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 28088309 - 28088151
Alignment:
Q  36 attgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttac 135  Q
    |||||||||||||| ||||||| || ||||| ||| ||||| || |||| | |||   ||||||| | |||||| ||||||||||| ||||| ||||| |    
T  28088309 attgttttcatataagctataaactgttttcataagctatcatggagagctcatggaaataagctcaaaacaacctatagacatgt-ataagttgtttcc 28088211  T
Q  136 ataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtct 195  Q
    |||||| || |||||   ||| | ||| | |||| ||| ||||||| |||||||||||||    
T  28088210 ataagccattccaaactgtctcaaaagtggttatatcaataaataagctcaaataagtct 28088151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 18264308 - 18264366
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatg 90  Q
    |||||||||||||||| | | |||||||||||||| |||||||||||| |||| |||||    
T  18264308 tcaaattgttttcatacaagttataagctattttcttaaactatcctgaagaggttatg 18264366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 3155155 - 3155263
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| ||||| ||||||  ||||||||||||||| |||  ||||||| |||| | |||   ||||||||| |||| ||||||||||||||||||| |||    
T  3155155 tcaaactgtttccatataacctataagctattttcataagatatcctggagagct-atggaaataagctgaaaacagcttatagacatgtcataagttgt 3155253  T
Q  132 ttacataagc 141  Q
     || ||||||    
T  3155254 gtatataagc 3155263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 34939763 - 34939824
Alignment:
Q  72 ctatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||||| ||||||||||   ||||||||| ||||| |||| |||||||||||||||||||    
T  34939763 ctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgttt 34939824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 24782032 - 24782084
Alignment:
Q  26 atcaaatcaaattgttttcatatatgctataagctattttcctaaactatcct 78  Q
    |||||||||||||||||||||||| | ||||||||| |||  |||||||||||    
T  24782032 atcaaatcaaattgttttcatataagttataagctactttaataaactatcct 24782084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 2027489 - 2027390
Alignment:
Q  40 ttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataa 139  Q
    ||||||||||  ||||||||| || || ||| ||| | |||||||||||  |  ||||||||| |||| ||||| || |||||||||||||||| |||||    
T  2027489 ttttcatataacctataagctgttctcataagctagcatgtagagtttaaataaataagctgaaaacagcttatggaaatgtcataagctgttttcataa 2027390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 20377949 - 20377902
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||||| || |||||||||||||||||||||||| ||||| |||||||    
T  20377949 ataagccgaaaacaacttatagacatgtcataagttgttttcataagc 20377902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 30863288 - 30863387
Alignment:
Q  95 taagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtc 194  Q
    |||||||| ||||||||||  |||||||||||| ||||| |||||||  | ||||||| ||| | ||| | ||||| || ||||||  ||||||||||||    
T  30863288 taagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaataaataggctcaaataagtc 30863387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 22691611 - 22691558
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagt 85  Q
    |||||||||||||||||| | ||||| |||||||| ||| |||||||| |||||    
T  22691611 tcaaattgttttcatataagttataacctattttcataacctatcctggagagt 22691558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 22742345 - 22742378
Alignment:
Q  32 tcaaattgttttcatatatgctataagctatttt 65  Q
    |||||||||||||||||| |||||||||||||||    
T  22742345 tcaaattgttttcatataagctataagctatttt 22742378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 1275134 - 1275230
Alignment:
Q  38 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctg-ataacaacttatagacatgtcataagctgttt 133  Q
    |||||||||||| |||||||||| ||||| ||   ||||||| |||| |||||   |||||||| | |||||| ||  |||||||||||||||||||    
T  1275134 tgttttcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagctgaaaaacaacgtaaggacatgtcataagctgttt 1275230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 1669824 - 1669780
Alignment:
Q  97 agctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||||| |||| ||||||||||||||||||| ||||| |||||||    
T  1669824 agctgaaaacagcttatagacatgtcataagttgttttcataagc 1669780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 20502153 - 20502051
Alignment:
Q  38 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacat 137  Q
    |||||||||||| |||||||||| ||||| ||| |||||||| |||| ||||| | ||||||||| ||||| | |  ||||||||||| ||||| | |||    
T  20502153 tgttttcatatacgctataagctgttttcataagctatcctgaagagcttatgagaataagctgaaaacaaatgacggacatgtcatatgctgtctgcat 20502054  T
Q  138 aag 140  Q
    |||    
T  20502053 aag 20502051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 33306816 - 33306757
Alignment:
Q  30 aatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttat 89  Q
    |||||||||||||||||||| |||||||||||||||| ||||| || || ||||| ||||    
T  33306816 aatcaaattgttttcatataagctataagctattttcataaacaattctatagagattat 33306757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 52440759 - 52440656
Alignment:
Q  26 atcaaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcata 125  Q
    |||||||||||||||||||| ||| |||||||||||||||| |||  |||| || |||  |||||   || || ||| ||||||||||  ||||||||||    
T  52440759 atcaaatcaaattgttttcaaataagctataagctattttcataatttatcttgaagaacttatgaaaattagttgaaaacaacttatgaacatgtcata 52440660  T
Q  126 agct 129  Q
    ||||    
T  52440659 agct 52440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 30923927 - 30923883
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacata 138  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  30923927 ataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 36200115 - 36200179
Alignment:
Q  72 ctatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttaca 136  Q
    ||||||||||||| | |||   ||||||||| |||||||||| ||||||||||||| ||||||||    
T  36200115 ctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataagttgtttaca 36200179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 42817251 - 42817204
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    ||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  42817251 ataagctgaaaacaacttatggacatgtcatatgctgtttccataagc 42817204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 41724253 - 41724299
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataag 140  Q
    ||||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  41724253 ataagctgaaaacaacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 9279387 - 9279310
Alignment:
Q  62 ttttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataa 139  Q
    ||||| ||||||||| || |||||||| |   ||||||||| |||| |||||| |||||| ||||||||||| |||||    
T  9279387 ttttcataaactatcatgaagagtttaaggaaataagctgaaaacagcttatatacatgttataagctgtttccataa 9279310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 16990246 - 16990161
Alignment:
Q  38 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtca 123  Q
    |||||||||||| | |||||| | ||||| ||||||||| || |||  || ||   ||||||||| ||||||||||||||||||||    
T  16990246 tgttttcatataagatataagttgttttcttaaactatcatgaagaacttgtgcaaataagctgaaaacaacttatagacatgtca 16990161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 27290952 - 27290883
Alignment:
Q  72 ctatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||||||| |||||| |||   ||||||||| |||| ||||| | ||||||||||||||||| |||||||    
T  27290952 ctatcctgcagagttcatggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagc 27290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 42039203 - 42039244
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttac 135  Q
    ||||||||| ||||||||| || |||||||||||||||||||    
T  42039203 ataagctgaaaacaacttacagccatgtcataagctgtttac 42039244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 680484 - 680589
Alignment:
Q  34 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||||||||| |||| |||||||||||||||| ||| ||||| || |||  || ||   ||||||||| ||||  ||||| ||||||||||||||||||    
T  680484 aaattgttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgttt 680583  T
Q  134 acataa 139  Q
     |||||    
T  680584 tcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 15866754 - 15866665
Alignment:
Q  37 ttgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 126  Q
    ||||||||||||| ||||||||| | |||| ||| |||||||| |||| ||||||  | ||||||| |||| |||||| |||||||||||    
T  15866754 ttgttttcatataagctataagccactttcataagctatcctggagagcttatgtaaacaagctgaaaacaccttatatacatgtcataa 15866665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 43141850 - 43141951
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||||||| |||||| |||||||| | ||||| ||| |||||||| ||||||||||   ||||  ||| |||||||||| | ||||||||||| |||    
T  43141850 tcaaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagttgt 43141949  T
Q  132 tt 133  Q
    ||    
T  43141950 tt 43141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 40158697 - 40158805
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| ||||||| |||| || ||||| | ||||| |||  ||| ||| |||| ||||||   |||||||| ||||||||||| ||||||||||||||||    
T  40158697 tcaaactgttttcgtataagcaataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgt 40158796  T
Q  132 ttacataag 140  Q
    || ||||||    
T  40158797 tttcataag 40158805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 41817170 - 41817254
Alignment:
Q  55 taagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataa 139  Q
    |||||||||||| |||||||||||| |||| |||||   ||||||||| ||||| ||||  |||||||||||| ||||| |||||    
T  41817170 taagctattttcataaactatcctggagagcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataa 41817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 5759660 - 5759557
Alignment:
Q  38 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgata-acaacttatagacatgtcataagctgtttaca 136  Q
    ||||||| ||||||||||||||| ||||| ||| |||| ||| || |||| ||   ||||||||| | ||||||||| |||||||| |||||||||| ||    
T  5759660 tgttttcgtatatgctataagctgttttcataagctattctggagggtttgtgaaaataagctgaaacacaacttatggacatgtc-taagctgtttcca 5759562  T
Q  137 taagc 141  Q
    |||||    
T  5759561 taagc 5759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 787373 - 787419
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataag 140  Q
    ||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataag 787419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 1830150 - 1830180
Alignment:
Q  164 gcttatgtcagtaaataaactcaaataagtc 194  Q
    |||||||||||||||||||||||||||||||    
T  1830150 gcttatgtcagtaaataaactcaaataagtc 1830180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 12215793 - 12215895
Alignment:
Q  39 gttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacata 138  Q
    |||| ||||||||||||||||| ||||  ||| | |||||  |||| ||||| | ||| | ||| |||| ||||| ||||||||||||||| ||| ||||    
T  12215793 gtttccatatatgctataagctgtttttataagccatccttgagagcttatgggaatatggtgaaaacagcttatggacatgtcataagctatttccata 12215892  T
Q  139 agc 141  Q
    |||    
T  12215893 agc 12215895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 22681275 - 22681230
Alignment:
Q  33 caaattgttttcatatatgctataagctattttcctaaactatcct 78  Q
    ||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  22681275 caaattgttttcatataagctataagctgttttcataatctatcct 22681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 6950363 - 6950463
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagt 193  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||||||  | ||||| | ||| | ||  | ||||| ||||| ||||||||||||||||    
T  6950363 ataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataagt 6950462  T
Q  194 c 194  Q
    |    
T  6950463 c 6950463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 11188225 - 11188145
Alignment:
Q  53 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||| |||||||  ||| |||||||  ||||||||||   |||| |||| ||||| ||||||||||||||||||||||||    
T  11188225 tataaactattttgataagctatcctagagagtttatggtaataaactgaaaacaagttatagacatgtcataagctgttt 11188145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 11569527 - 11569439
Alignment:
Q  53 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||||||| ||||| ||| ||||| || |||| || ||   ||||||||| ||||||||||  |||||||||||||||||| |||||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagc 11569439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 30191212 - 30191072
Alignment:
Q  52 ctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaag 151  Q
    ||||||||||||||  ||| |||||||| |  |||||||   ||||||||| ||||| || |  |||||||||||| ||||| |||||||  | |||||     
T  30191212 ctataagctattttgataagctatcctgaaatgtttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaac 30191113  T
Q  152 attcttataagagcttatgtcagtaaataaactcaaataag 192  Q
    | ||| | ||| ||||||| || || |||||||||||||||    
T  30191112 agtctaacaagtgcttatgccaatagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 30259155 - 30259202
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||| |||| |||||||||||||||| ||||||||||||| |||||||    
T  30259155 ataaactgaaaacaacttatagacatatcataagctgtttccataagc 30259202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 4558779 - 4558885
Alignment:
Q  34 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||| ||||||||||||||||||||| ||| | ||| |||||||  |||| |||||   |||| || | |||||||||||||||  ||||||| | |||    
T  4558779 aaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaataaactaaaaacaacttatagacacatcataagttattt 4558878  T
Q  134 acataag 140  Q
     ||||||    
T  4558879 ccataag 4558885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 5349680 - 5349651
Alignment:
Q  36 attgttttcatatatgctataagctatttt 65  Q
    ||||||||||||||||||||||||||||||    
T  5349680 attgttttcatatatgctataagctatttt 5349651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 42215377 - 42215296
Alignment:
Q  52 ctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||| |||||||| ||  |||||||| |||| ||||||  ||||||||| |||| |||||  ||| ||||||||||||||    
T  42215377 ctataacctattttcatatgctatcctggagagcttatgtaaataagctgaaaacagcttatgaacaagtcataagctgttt 42215296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 26473766 - 26473734
Alignment:
Q  109 cttatagacatgtcataagctgtttacataagc 141  Q
    ||||||||||||||||||||||||| |||||||    
T  26473766 cttatagacatgtcataagctgttttcataagc 26473734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 54325128 - 54325034
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 126  Q
    ||||| |||||||||||| ||||||||||||||||  || ||||| || ||||||||||   |||| |||| |||| ||||| ||||| ||||||    
T  54325128 tcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatggacatatcataa 54325034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 3176133 - 3176086
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    ||||||||| ||||||||||||||||| |||||| ||||| |||||||    
T  3176133 ataagctgaaaacaacttatagacatgacataagatgttttcataagc 3176086  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 30207665 - 30207562
Alignment:
Q  29 aaatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagc 128  Q
    |||||||| |||||||||||| |||||||| | ||||| ||| ||| | |  |||| |||||   ||||||||| |||| |||| |||||||||||| ||    
T  30207665 aaatcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagcttacagacatgtcatatgc 30207566  T
Q  129 tgtt 132  Q
    ||||    
T  30207565 tgtt 30207562  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 50800059 - 50800016
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacat 137  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||    
T  50800059 ataagctgaaaacagcttatagacatgtcataagttgtttacat 50800016  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 51630092 - 51630170
Alignment:
Q  34 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaactta 112  Q
    |||||||||| ||||| |||||||||||||||| ||| ||||| || ||| ||||||   ||||||||| |||| ||||    
T  51630092 aaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaacatctta 51630170  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 6979039 - 6978958
Alignment:
Q  46 tatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataag 127  Q
    ||||||||||||| | ||||  ||| | |||||  ||||||||||   ||||||||| |||| |||||||||||||||||||    
T  6979039 tatatgctataagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagcttatagacatgtcataag 6978958  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 8422926 - 8422830
Alignment:
Q  36 attgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||||||||||| |||||||| | |||||  || ||||| || ||||||||||   |||||||||||| |  |||||||||||| |||| ||||||    
T  8422926 attgttttcatataagctataagttgttttcacaatctatcttggagagtttatgcaaataagctgataa-attttatagacatgttataaactgttt 8422830  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 19304969 - 19305006
Alignment:
Q  96 aagctgataacaacttatagacatgtcataagctgttt 133  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  19304969 aagctgaaaacaacttatggacatgtcataagctgttt 19305006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 23819068 - 23819169
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| |||||||||||| | |||||  | ||||| ||| ||||| || |||| ||||    ||||| ||| |||||||||| |||||||||||||||||    
T  23819068 tcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgt 23819167  T
Q  132 tt 133  Q
    ||    
T  23819168 tt 23819169  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 29263353 - 29263450
Alignment:
Q  36 attgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 133  Q
    |||||||||| ||| || ||||| | ||||| ||| |||||||| |||| || ||   ||||||||| ||||||||||  |||| |||||||||||||    
T  29263353 attgttttcaaataagcgataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaacatatcataagctgttt 29263450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 2996552 - 2996712
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    |||||||||||| ||||| | |||||| | ||||| ||| ||||| || ||||  ||||   ||||| ||| || | ||||| ||||||||||||| |||    
T  2996552 tcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgt 2996651  T
Q  132 ttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataag 192  Q
    || |||||||  |  |||| | ||| | ||| |||||||||| |||||||  |||||||||    
T  2996652 tttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataag 2996712  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 21157747 - 21157907
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||| ||||||||| || |||||||| | ||||| ||  |||||||| |||| |||||   ||||||| | |||| ||| |  | ||||||||||||||    
T  21157747 tcaaactgttttcatgtaagctataagatgttttcatatgctatcctgaagagcttatggaaataagctaaaaacagcttttgtaaatgtcataagctgt 21157846  T
Q  132 ttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataag 192  Q
    ||   |||||  | ||||| | ||||| ||| ||||||||||||| || | ||||||||||    
T  21157847 ttctgtaagctcttccaaacagtcttacaagtgcttatgtcagtagatgagctcaaataag 21157907  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 27555 - 27664
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 131  Q
    ||||||||||||||||||  ||||||| | ||||| ||||||||| ||   ||  | ||   ||||||||| |||||||||||| ||||||||||||| |    
T  27555 tcaaattgttttcatataaactataagttgttttcataaactatcttggtaagcgtgtggaaataagctgaaaacaacttatagccatgtcataagctat 27654  T
Q  132 ttacataagc 141  Q
    || |||||||    
T  27655 ttccataagc 27664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 10646 - 10599
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    ||||||||| |||||||||| |||||||||| || |||||||||||||    
T  10646 ataagctgaaaacaacttatggacatgtcattagttgtttacataagc 10599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 33894668 - 33894715
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagc 141  Q
    ||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  33894668 ataagctgaaaacaacttatggacatgtcatatgctgttttcataagc 33894715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 6552364 - 6552286
Alignment:
Q  51 gctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 129  Q
    ||||||| |||||||| ||||||||| || ||||||||||   ||||||||| |||| |||||  | ||||||||||||    
T  6552364 gctataaactattttcataaactatcatgcagagtttatgaaaataagctgaaaacagcttatgaatatgtcataagct 6552286  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 5369782 - 5369737
Alignment:
Q  32 tcaaattgttttcatatatgctataagctattttcctaaactatcc 77  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||    
T  5369782 tcaaactgttttcatatatgctataagctgttttcataagctatcc 5369737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 12242285 - 12242382
Alignment:
Q  94 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataa 191  Q
    ||||||||| |||||||||||| ||| |||||||| |||| |||||||  |  |||| | ||| | ||||| ||||||||||| || | |||||||||    
T  12242285 ataagctgaaaacaacttataggcatatcataagccgtttgcataagctctctcaaacagtctcacaagaggttatgtcagtagatcacctcaaataa 12242382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 33645980 - 33645943
Alignment:
Q  104 aacaacttatagacatgtcataagctgtttacataagc 141  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  33645980 aacaacttatagacatgtcataagttgtttccataagc 33645943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 38010694 - 38010739
Alignment:
Q  33 caaattgttttcatatatgctataagctattttcctaaactatcct 78  Q
    ||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  38010694 caaattgttttcatataagctataagctgttttcataatctatcct 38010739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 1645719 - 1645683
Alignment:
Q  104 aacaacttatagacatgtcataagctgtttacataag 140  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  1645719 aacaacttataaacatgtcataagttgtttacataag 1645683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 44151565 - 44151477
Alignment:
Q  38 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 126  Q
    ||||| |||||| |||||||| | ||||| ||||||||| || | || |||||   ||||||||| |||| ||||| ||||||||||||    
T  44151565 tgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataa 44151477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 12732 - 12687
Alignment:
Q  95 taagctgataacaacttatagacatgtcataagctgtttacataag 140  Q
    |||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  12732 taagctgaaaacaacttatggacatgtcataagttgtttccataag 12687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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