View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_39 (Length: 324)
Name: NF0598_high_39
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 155 - 297
Target Start/End: Complemental strand, 31240101 - 31239959
Alignment:
| Q |
155 |
ttaagagcaatgttaatggtatagctaaatttaatttttaactaggtactaaataattagttcttcatccacaagttctaactcatcaaatacccggaat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31240101 |
ttaagagcaatgttaatggtatagctaaatttaatttttaactaggtactaaataattagttcttcatccacaagttctaactcatcaaataaccggaat |
31240002 |
T |
|
| Q |
255 |
tcgaaccataaatctcccatttatgtgtgtcagtttagaaatg |
297 |
Q |
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| T |
31240001 |
tcgaaccataaatctcccatttatgtgtgtcagtttagaaatg |
31239959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 31240246 - 31240192
Alignment:
| Q |
81 |
ttcagttaccgaacttagctctcaaatacttatcaaaaaagaaaaacgtcacctc |
135 |
Q |
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| T |
31240246 |
ttcagttaccgaacttagctcttaaatacttatcaaaaaagaaaaacgtcacctc |
31240192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 7913372 - 7913413
Alignment:
| Q |
201 |
tactaaataattagttcttcatccacaagttctaactcatca |
242 |
Q |
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| T |
7913372 |
tactaaataattagctcttcatccacaagtcctaactcatca |
7913413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 40987307 - 40987339
Alignment:
| Q |
162 |
caatgttaatggtatagctaaatttaattttta |
194 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
40987307 |
caatgttagtggtatagctaaatttaattttta |
40987339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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