View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_high_41 (Length: 320)

Name: NF0598_high_41
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_high_41
NF0598_high_41
[»] chr6 (5 HSPs)
chr6 (94-233)||(14593106-14593245)
chr6 (94-233)||(13308326-13308463)
chr6 (1-66)||(13308244-13308309)
chr6 (1-48)||(14595448-14595495)
chr6 (61-100)||(14595485-14595524)
[»] chr5 (3 HSPs)
chr5 (114-230)||(6837779-6837895)
chr5 (147-211)||(34915885-34915949)
chr5 (3-51)||(6837947-6837995)
[»] chr3 (2 HSPs)
chr3 (114-230)||(22598549-22598665)
chr3 (3-51)||(22598449-22598497)
[»] chr7 (4 HSPs)
chr7 (114-230)||(22347989-22348105)
chr7 (94-208)||(21281843-21281957)
chr7 (147-211)||(17859863-17859927)
chr7 (2-66)||(21281974-21282038)
[»] chr1 (2 HSPs)
chr1 (114-228)||(16000914-16001028)
chr1 (1-51)||(16000812-16000862)
[»] chr4 (1 HSPs)
chr4 (147-211)||(4968394-4968458)
[»] chr8 (1 HSPs)
chr8 (114-227)||(306589-306702)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 14593245 - 14593106
Alignment:
Q  94 aaaatgaagtatgatattcagttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggagg 193  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14593245 aaaatgaagtatgatatccagttttggcagcaatggttacagattgtttggccacatcggtgtcaactgttgcttctgaaagcgcatttagcactggagg 14593146  T
Q  194 aagagttttagacacatacaggagctccttgagtccgaca 233  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  14593145 aagagttttagacacatataggagttccttgagtccgaca 14593106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 13308326 - 13308463
Alignment:
Q  94 aaaatgaagtatgatattcagttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggagg 193  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||| ||||||||||||||||    
T  13308326 aaaatgaagtctgatatccagttttggcagcaatggttagagattgtttggcggtg--ggtgtcaactgttgcttctgaaagcacatttagcactggagg 13308423  T
Q  194 aagagttttagacacatacaggagctccttgagtccgaca 233  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  13308424 aagagttttagacacatataggagctccttgaatccgaca 13308463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13308244 - 13308309
Alignment:
Q  1 caacaaaatgaccttgagaggtacttaagcgacccacctgaaaacgatgatgagaagtttaacatt 66  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13308244 caacaaaatgaccttgagaagtacttaagcgacccacctgaaaacgatgatgagaagtttaacatt 13308309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14595495 - 14595448
Alignment:
Q  1 caacaaaatgaccttgagaggtacttaagcgacccacctgaaaacgat 48  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14595495 caacaaaatgaccttgagaggtacttaagtgacccacctgaaaacgat 14595448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 14595524 - 14595485
Alignment:
Q  61 aacatttgaaaacaaaggaaaccattgttcaacaaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14595524 aacatttgaaaacaaaggaaaccattgttcaacaaaatga 14595485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 6837895 - 6837779
Alignment:
Q  114 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 213  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | |||||||| || |||||||||||||| ||||||||  ||||||||||||| |    
T  6837895 gttttggcaacaatggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcatttagcaccggaggaaggattttagacacatata 6837796  T
Q  214 ggagctccttgagtccg 230  Q
    ||||||| |||||||||    
T  6837795 ggagctcattgagtccg 6837779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 34915885 - 34915949
Alignment:
Q  147 acaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacata 211  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  34915885 acaccagtttcaactgtggcttctgaaagtgcctttagcactggaggaagagttttagatacata 34915949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 6837995 - 6837947
Alignment:
Q  3 acaaaatgaccttgagaggtacttaagcgacccacctgaaaacgatgat 51  Q
    |||||||||||||||||| ||||| || ||||| || ||||||||||||    
T  6837995 acaaaatgaccttgagagatacttgagtgaccctccagaaaacgatgat 6837947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 22598549 - 22598665
Alignment:
Q  114 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 213  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | |||||||| || |||||||||||||| ||||||||  ||||||||||||| |    
T  22598549 gttttggcaacaatggttagagatgtgttggccacaccagtatcatcagttgcttcggagagcgcatttagcaccggaggaaggattttagacacatata 22598648  T
Q  214 ggagctccttgagtccg 230  Q
    ||||||| |||||||||    
T  22598649 ggagctcattgagtccg 22598665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 22598449 - 22598497
Alignment:
Q  3 acaaaatgaccttgagaggtacttaagcgacccacctgaaaacgatgat 51  Q
    |||||||||||||||||| ||||| || ||||| || ||||||||||||    
T  22598449 acaaaatgaccttgagagatacttgagtgaccctccagaaaacgatgat 22598497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 22347989 - 22348105
Alignment:
Q  114 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaa-agcgcatttagcactggaggaagagttttagacacatac 212  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | ||||||| |||| ||||||||||||||||| |||||  |||||||||||||     
T  22347989 gttttggcaacaatggttagagatgtgttggccacaccagtatcatcagttgctt-tgaagagcgcatttagcactgggggaaggattttagacacatat 22348087  T
Q  213 aggagctccttgagtccg 230  Q
    || ||||| |||||||||    
T  22348088 agaagctcattgagtccg 22348105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 21281957 - 21281843
Alignment:
Q  94 aaaatgaagtatgatattcagttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggagg 193  Q
    |||||||||| || |||||||||||||||  ||||||||||||||||||| ||||||  | ||||||  |||||  | |||||||||||||||  ||| |    
T  21281957 aaaatgaagtttgttattcagttttggcaataatggttagagattgtttgaccacacatgcgtcaacacttgctagtaaaagcgcatttagcataggaag 21281858  T
Q  194 aagagttttagacac 208  Q
    ||| |||||| ||||    
T  21281857 aagggttttaaacac 21281843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 17859927 - 17859863
Alignment:
Q  147 acaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacata 211  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  17859927 acaccagtttcaactgtggcttctgaaagtgcctttagcactggaggaagagttttagatacata 17859863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 21282038 - 21281974
Alignment:
Q  2 aacaaaatgaccttgagaggtacttaagcgacccacctgaaaacgatgatgagaagtttaacatt 66  Q
    |||||||||||||||| ||||||||||| || |||||| ||||| ||||||| || ||| |||||    
T  21282038 aacaaaatgaccttgaaaggtacttaagtgatccaccttaaaacaatgatgaaaaatttgacatt 21281974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 228
Target Start/End: Original strand, 16000914 - 16001028
Alignment:
Q  114 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 213  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | |||||||| || ||||||||||||||  | |||||  ||||||||||||| |    
T  16000914 gttttggcaacaatggttagagatgtgttggccacacctgtatcatcagttgcttcggagagcgcatttagcacccggggaaggattttagacacatata 16001013  T
Q  214 ggagctccttgagtc 228  Q
    | ||||| |||||||    
T  16001014 gaagctcattgagtc 16001028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16000812 - 16000862
Alignment:
Q  1 caacaaaatgaccttgagaggtacttaagcgacccacctgaaaacgatgat 51  Q
    |||||||||||||||||||| ||||| || ||||| || ||||||||||||    
T  16000812 caacaaaatgaccttgagagatacttgagtgaccctccagaaaacgatgat 16000862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 4968458 - 4968394
Alignment:
Q  147 acaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacata 211  Q
    ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| |||||    
T  4968458 acaccagtttcaactgtggcttctgaaagtgcctttagcactggaggaagagttttagatacata 4968394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 306702 - 306589
Alignment:
Q  114 gttttggcagcaatggttagagattgtttggccacaccggtgtcaactgttgcttctgaaagcgcatttagcactggaggaagagttttagacacataca 213  Q
    ||||||||| ||||||||||||||   ||||||||||| || ||| | ||| |||| || |||||||||||||| || |||||  |||||||| |||| |    
T  306702 gttttggcaacaatggttagagatgtcttggccacaccagtatcatcagtttcttcggagagcgcatttagcaccgggggaaggattttagacccatata 306603  T
Q  214 ggagctccttgagt 227  Q
    ||||| | ||||||    
T  306602 ggagcccattgagt 306589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 105 times since January 2019
Visitors: 3831