View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_46 (Length: 309)
Name: NF0598_high_46
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 26634660 - 26634374
Alignment:
| Q |
1 |
tcaattgaatttcttttatttctattttttgtttggtaaagtaataaaaaatttcattcttaaatttgttgtactatttctttaacttttaaacttccta |
100 |
Q |
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| T |
26634660 |
tcaattgaatttcttttatttctattttttgtttggtatagtaataaaaaatttcattcttaaatttgttgtactatttctttaacttttaaacttccta |
26634561 |
T |
|
| Q |
101 |
ggttaattatgtgtttgtatattgattccaagaccggcaaaagcaaccataataacaccgtcattccaagaatattgggggcaaaaagtttattccaaga |
200 |
Q |
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| T |
26634560 |
----agttatgtgtttgtatattgattccaagaccggcaaaagcaaccataataacaccgtcattccaagaatattgggggcaaagagtttattccaaga |
26634465 |
T |
|
| Q |
201 |
ttcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggcaacag |
296 |
Q |
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| T |
26634464 |
ttc-----aatggaacaaagttaatagattattgctactttataccaaggtctcttttctttgtctttggacctatattatatagaacggtaacag |
26634374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 26612070 - 26611791
Alignment:
| Q |
3 |
aattgaatttcttttatttctatttt--ttgtttggtaaagtaataaaaaatttcattcttaaatttgttgtactatttctttaacttttaaacttccta |
100 |
Q |
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||||||||||||||||||||| ||| || |||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
26612070 |
aattgaatttcttttatttcttctttctttttttgatagagtaataaaaaaattcattcttaaatttgttgtactatttctttaacttttaaattacttt |
26611971 |
T |
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| Q |
101 |
gg---ttaa--ttatgtgtttg-tatattgattccaagaccggcaaaagcaaccataataacaccgtcattccaagaatattgggggcaaaaagtttatt |
194 |
Q |
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| T |
26611970 |
aacttttaaacttttaaatttcctaaattgattccaagaccggcaaaagcaaccataataacaccgtcattccaagaatattggggacaaagagtttatt |
26611871 |
T |
|
| Q |
195 |
ccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacct |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||| |
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| T |
26611870 |
ccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtttattttctttgtgtttggacct |
26611791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 79 - 290
Target Start/End: Complemental strand, 26627169 - 26626948
Alignment:
| Q |
79 |
tctttaacttttaaacttcctaggttaattatgtgtttgtatattgattccaagaccggcaaaagcaaccataataacaccgtcattccaagaatattgg |
178 |
Q |
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| T |
26627169 |
tctttaacttttaaatttcctaaatt---tatgtgtttgtatattgattccaagaccggcaaaagcaaccatagtaacaccgtcattccatgaatattgg |
26627073 |
T |
|
| Q |
179 |
gggcaaaaagtttattcca-------------agattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtc |
265 |
Q |
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| T |
26627072 |
gggtcaagagtttattccaccacgagattccaagattcaactgaatggaacaaagttaatacattattactaatttataccaaggtttcttttctttgtc |
26626973 |
T |
|
| Q |
266 |
tttggacctatattatatagaacgg |
290 |
Q |
| |
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| T |
26626972 |
tttggacctatattatatagaacgg |
26626948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 290
Target Start/End: Complemental strand, 26646547 - 26646386
Alignment:
| Q |
133 |
accggcaaaagcaaccataataacaccgtcattccaagaatattgggggcaaaaagtttattcca-----agattcaactgaatggaacaaagttaatag |
227 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||||||||||||| |||| |
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| T |
26646547 |
accggcaaaagcaacaataataacaccgtcattccatgaatattggggcagaagagtttattccaccacgagattccactgaatggaacaaagtttatag |
26646448 |
T |
|
| Q |
228 |
attattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacgg |
290 |
Q |
| |
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||||||||||| | | ||||| | | | |||||||| |||||| |||||| ||||||||||| |
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| T |
26646447 |
attattgctac-tagtgccaagattttttttctttgtttttggatctatataatatagaacgg |
26646386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26627220 - 26627169
Alignment:
| Q |
1 |
tcaattgaatttcttttatttctattttttgtttggtaaagtaataaaaaat |
52 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
26627220 |
tcaattgaatttcttttattccttttttttgtttggtaaagtaataaaaaat |
26627169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 26713634 - 26713524
Alignment:
| Q |
136 |
ggcaaaagcaaccataataacaccgtcattccaagaatattggggg-caaaaagtttattcca-----agatt-caactgaatggaacaaagttaataga |
228 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||| |||| ||||||||||| ||| ||||| |
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| T |
26713634 |
ggcaaaagcaaccataataacaccgtcattccaggaatattgggggttgaagagtttattccaccacgagattccaaccgaatggaacaacgtttataga |
26713535 |
T |
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| Q |
229 |
ttattgctact |
239 |
Q |
| |
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|||| |||||| |
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| T |
26713534 |
ttatcgctact |
26713524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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