View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_51 (Length: 293)
Name: NF0598_high_51
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 25540463 - 25540207
Alignment:
| Q |
1 |
cccaataatttttaaaggtaagggctttagtggccttacccttaggccggccctgcataacaacaaaagcaatttgttcaaattgggctacactatagca |
100 |
Q |
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| T |
25540463 |
cccaataatttttaaaggtaagggctttagtggccttacccttaggccggccctgcataacaacaaaagcaatttgttcaaattgcgctacactatagca |
25540364 |
T |
|
| Q |
101 |
ccatagtgtcgctatagctgctatttgataaccttgaaagtacaaattatgaaaacaaattttttacacacacttaagtaggtatattgtttaggaaata |
200 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25540363 |
ccatagcgtcgctatagctgctatttgataacattgaaagtacaaattatgaaaacaaattttttacacacacttaagtatgtatattgtttaggaaata |
25540264 |
T |
|
| Q |
201 |
taccacataaattagaattctgagcaaaccaagagcaccagcaagtcggtaatcagt |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540263 |
taccacataaattagaattctgagcaaaccaagagcaccagcaagtcggtaatcagt |
25540207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 14580165 - 14580199
Alignment:
| Q |
24 |
gctttagtggccttacccttaggccggccctgcat |
58 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
14580165 |
gctttggtggccttacccttaggccggccctgcat |
14580199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 47442507 - 47442539
Alignment:
| Q |
23 |
ggctttagtggccttacccttaggccggccctg |
55 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
47442507 |
ggctttagtggccttacccttaagccggccctg |
47442539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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