View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_53 (Length: 286)
Name: NF0598_high_53
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 38608708 - 38608607
Alignment:
| Q |
9 |
gattattcttgctgtagggatagtagcatgtgcgatattattctcaaaattatcggtgaaagacaattcattttaggttgaagttgtgaaacaaagtatt |
108 |
Q |
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| T |
38608708 |
gattattcttgcagtagggatagtagcatgtgcgatattattctcaaaattatcagtgaaagacaattcattttaggttgaagttgtgaaacaaagtatt |
38608609 |
T |
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| Q |
109 |
gt |
110 |
Q |
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|| |
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| T |
38608608 |
gt |
38608607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 38608495 - 38608402
Alignment:
| Q |
166 |
aaatagattcgtgatttacacctttaaaattcactttagaactactc-tttcttaattttctttatctctcattttcaatagatggtgaaaatt |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608495 |
aaatagattcgtgatttacacctttaaaattcactttagaactactcttttcttaattttctttatctctcattttcaatagatggtgaaaatt |
38608402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 38608553 - 38608514
Alignment:
| Q |
111 |
aattctcaacctcttgaatcattgttcctaataattgtga |
150 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
38608553 |
aattctcaacctcttgaatcattgttcctaatagttgtga |
38608514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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