View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_55 (Length: 267)
Name: NF0598_high_55
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 51728128 - 51727903
Alignment:
| Q |
19 |
ctctatcattcattttggttcacagttaatccttccatatccattacttggacagggagtttaatttaatggttcggtttttagtaaaaaataaataaat |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
51728128 |
ctctatcattcattttggttcacagttaatccctccatatccattacttggacaggggg-----tttaatggttcggtttttagtaaaaaataaataaat |
51728034 |
T |
|
| Q |
119 |
atccaagtttaacaaatctacatcgatttgtctagaaatccaagcttagaggacaaatgctgttcacgagctttgtcaaaaatagtaaaaatacatatct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728033 |
atccaagtttaacaaatctacatcgatttgtctagaaatcctagcttagaggacaaatgctgttcacgagctttgtcaaaaatagtaaaaatacatatct |
51727934 |
T |
|
| Q |
219 |
actcgaagatacattgttcacgagctttcaa |
249 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
51727933 |
actccaagatacattgttcacgagctttcaa |
51727903 |
T |
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