View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_58 (Length: 252)
Name: NF0598_high_58
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_58 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37160842 - 37161080
Alignment:
| Q |
1 |
tctgctagtacgtctattcccacccatgctgcaaaccccggtactcctgcaattaattaagtgtatacttagatttacaatgaatttggaaaaatcacaa |
100 |
Q |
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| T |
37160842 |
tctgctagtacctctattcccacccatgctgcaaaccccggtactcctgcaattaattaagtgtatacttagatttacaatgaatttggaaaaatcacaa |
37160941 |
T |
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| Q |
101 |
ttacctaaggaatgaaaagtagacatgtatagaaaaaactgacctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctag |
200 |
Q |
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| T |
37160942 |
ttacctaaggaatgaaaagtagacatgtatagaaaaaactgacctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctag |
37161041 |
T |
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| Q |
201 |
ttatttgagaagaaggtacaatactatattcagcaacag |
239 |
Q |
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| T |
37161042 |
ttatttgagaagaaggtacaatactatattcagcaacag |
37161080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 37150103 - 37150198
Alignment:
| Q |
142 |
acctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagttatttgagaagaaggtacaatactatattcagcaac |
237 |
Q |
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| T |
37150103 |
acctaaagaaccaagataatcagacagtgaaatcccattagcaggatcaatttttctaattatatgagaagagggtacaatgctatactcagcaac |
37150198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 37155249 - 37155344
Alignment:
| Q |
142 |
acctaaagaaccaagataatcagacaaagaaatcccatttgaagtatcaatttttctagttatttgagaagaaggtacaatactatattcagcaac |
237 |
Q |
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| T |
37155249 |
acctaaagtaccaagataatctgacagtgaaatcccattagcaggatcaattttcctcattatgtcagaagagggtacaatactatactcagcaac |
37155344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 37149712 - 37149762
Alignment:
| Q |
5 |
ctagtacgtctattcccacccatgctgcaaaccccggtactcctgcaatta |
55 |
Q |
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| T |
37149712 |
ctagtacctctattcccaaccatgctgcaaacccaggtactcctgcaatta |
37149762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 37153681 - 37153722
Alignment:
| Q |
13 |
tctattcccacccatgctgcaaaccccggtactcctgcaatt |
54 |
Q |
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| T |
37153681 |
tctattcccaaccatgctgcaaaccccgctactcctgcaatt |
37153722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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