View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598_high_6 (Length: 612)
Name: NF0598_high_6
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 92 - 597
Target Start/End: Complemental strand, 38609121 - 38608607
Alignment:
| Q |
92 |
atatattattcgtaggttcaggtatcgttcaaagtactgtcacaatatggtttgttatactt-ttgcaaatgatactcgtgttttggtgacattttggta |
190 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
38609121 |
atatattatttgtaggttcaggtatcgttcaaagtactgtcacaatatggtttgtgatactgattgccaatgatactcgtgctttggtgacattttggta |
38609022 |
T |
|
| Q |
191 |
tgcattggcaaataagggtcttgttgatta--------gctctctatggatatgctacgttgttcnnnnnnncctagtagttatttattctcatatcgtt |
282 |
Q |
| |
|
|| |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38609021 |
tgtattggcaaataagggttttgttgattatttgattagctctgtatggatatgctacgttgttctttttttcctagtagttatttattctcatatcgtt |
38608922 |
T |
|
| Q |
283 |
tcttaggttgcatatattgagggtgacttgtttaaaccgaacactgtatgttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaagg |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608921 |
tcttaggttgcatatattgagggtgacttgtttaaaccgaacaatgtatgttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaagg |
38608822 |
T |
|
| Q |
383 |
aatgtacgttctagtttagttgtacagaagcttaacgagttcatattgatttgttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatg |
482 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608821 |
aatgtacgttctagttaagttgtacagaagcttaacgagttcatattgatcttttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatg |
38608722 |
T |
|
| Q |
483 |
atgggcctggatggattattcttgctgtagggatagtagcatgtgcgatattattctcagaattatcggtgaaagacaattcattttaggttgaagttgt |
582 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38608721 |
acgggcctggatggattattcttgcagtagggatagtagcatgtgcgatattattctcaaaattatcagtgaaagacaattcattttaggttgaagttgt |
38608622 |
T |
|
| Q |
583 |
gaaacaaagtattgt |
597 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38608621 |
gaaacaaagtattgt |
38608607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 435 - 525
Target Start/End: Complemental strand, 38603625 - 38603535
Alignment:
| Q |
435 |
gttcaattcaggaatctaaaaaggagaagagcagtgactttaaatatgatgggcctggatggattattcttgctgtagggatagtagcatg |
525 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |||| |||||| || ||||||| ||||||||| | ||| ||||||||||| |
|
|
| T |
38603625 |
gttcatttcaggaatctaaaaagcagaagagcagtgagtttacatatgacttgcttggatgggctattcttgcagcaggtatagtagcatg |
38603535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 148 times since January 2019
Visitors: 3833