View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_high_63 (Length: 251)

Name: NF0598_high_63
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_high_63
NF0598_high_63
[»] chr2 (2 HSPs)
chr2 (40-205)||(25808576-25808741)
chr2 (145-205)||(28654848-28654908)
[»] chr6 (4 HSPs)
chr6 (40-204)||(26909520-26909684)
chr6 (145-205)||(13070206-13070266)
chr6 (145-204)||(15356096-15356155)
chr6 (139-202)||(14361357-14361420)
[»] scaffold0011 (1 HSPs)
scaffold0011 (40-203)||(135223-135386)
[»] chr7 (2 HSPs)
chr7 (40-205)||(23068673-23068839)
chr7 (145-205)||(2755393-2755453)
[»] chr5 (1 HSPs)
chr5 (40-205)||(20745868-20746033)
[»] chr8 (2 HSPs)
chr8 (145-211)||(28156886-28156952)
chr8 (145-205)||(3730642-3730702)
[»] chr1 (4 HSPs)
chr1 (145-205)||(20261029-20261089)
chr1 (206-242)||(41377135-41377171)
chr1 (160-206)||(6163782-6163828)
chr1 (53-205)||(18237388-18237540)
[»] scaffold0576 (1 HSPs)
scaffold0576 (145-204)||(1086-1145)
[»] chr3 (1 HSPs)
chr3 (145-204)||(38285664-38285723)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 25808741 - 25808576
Alignment:
Q  40 aaattgccaatattagcacttttggagaaagtgctattttagatgtaatcttatattagcacttgcaacaaaacgctattgtatttaacaaagtcagttt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| || ||||||||||||||||    
T  25808741 aaattgccaatattagcacttttggagaaagtgctattttagatgtactattatattagcacttgcaacaaaacactattttacttaacaaagtcagttt 25808642  T
Q  140 tttgttagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||    
T  25808641 tttgttagcactttttctaaaagtgttattaaatgggcgctactaaatgtcaaaattggcgtagtg 25808576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 28654908 - 28654848
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    ||||||||| | | ||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  28654908 tagcactttctttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 28654848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 26909520 - 26909684
Alignment:
Q  40 aaattgccaatattagcacttttggagaaagtgctattttagatgtaatcttatattagcacttgcaacaaaacgctattgtatttaacaaagtcagttt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| || ||| ||||| ||||||    
T  26909520 aaattgccaatattagcacttttggagaaagtgctattttagatgtacccttatattagcacttgcaacaaaacgctattatacttatcaaagccagttt 26909619  T
Q  140 tttgttagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagt 204  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||||||||||    
T  26909620 tttgttagcactttttctaaaagtgctattaactgagcgctactaaatgtcaaaattggcgtagt 26909684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 13070206 - 13070266
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    ||||| ||| ||| |||||||||||||||  |||||||||||| |||||||||||||||||    
T  13070206 tagcattttctctaaaagtgctattaaattagcgctactaaatttcaaaattggcgtagtg 13070266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 15356155 - 15356096
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagt 204  Q
    ||||||||| | | ||||||||||||||| ||||||||||||| |||||||||| |||||    
T  15356155 tagcactttctttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagt 15356096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 14361357 - 14361420
Alignment:
Q  139 ttttgttagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgta 202  Q
    ||||| ||||| ||| ||| |||||| ||||||||  |||||||||||| ||||||||||||||    
T  14361357 ttttgatagcattttctctaaaagtgttattaaattagcgctactaaatctcaaaattggcgta 14361420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 135386 - 135223
Alignment:
Q  40 aaattgccaatattagcacttttggagaaagtgctattttagatgtaatcttatattagcacttgcaacaaaacgctattgtatttaacaaagtcagttt 139  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  135386 aaattgtcaatattagcacttttgaagaaagtgctattttagatgtactcttgtattagcacttgcaacaaaacactattgtacttaacaaagtcagttt 135287  T
Q  140 tttgttagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtag 203  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||    
T  135286 tttgttagcactttttctaaaagtgctattaaatgggcgctattaaatgttaaaattggcgtag 135223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 23068673 - 23068839
Alignment:
Q  40 aaattgccaatattagcacttttggagaaagtgctattttagatgtaatcttatattagcacttgcaacaaaacgctattgtatttaacaaagtcagttt 139  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||    
T  23068673 aaattgccaatattagcacttttggagaaagtgctatatttgatgtactcttataatagcacttgcaacaaaacgctattgtacttaacaaattcagttt 23068772  T
Q  140 tttgttagcac-tttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  23068773 tttgttagcacttttttctaaaagtgctattaaatgggcgttactaaatgtcaaaattggcgtagtg 23068839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 2755393 - 2755453
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    ||||||||| | | ||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  2755393 tagcactttctttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 2755453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 20746033 - 20745868
Alignment:
Q  40 aaattgccaatattagcacttttggagaaagtgctattttagatgtaatcttatattagcacttgcaacaaaacgctattgtatttaacaaagtcagttt 139  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| || ||| ||||| ||||||    
T  20746033 aaattgccaatattagcactttcggagaaagtgctattttagatgtacccttatattagcacttgcaacaaaacgctattatacttatcaaagccagttt 20745934  T
Q  140 tttgttagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||    
T  20745933 tttgttagcactttttctaaaagtgctattaaatgagtgctactaaatgtcaaaattggcgtagtg 20745868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 28156952 - 28156886
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtgcccatt 211  Q
    ||||| ||| ||| |||||||||||||||  |||||||||||| |||||||||||||||||| ||||    
T  28156952 tagcattttctctaaaagtgctattaaattagcgctactaaatctcaaaattggcgtagtgctcatt 28156886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 3730702 - 3730642
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    ||||||||| | | ||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  3730702 tagcactttctttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 3730642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 20261089 - 20261029
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
    ||||||||| | | ||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  20261089 tagcactttctttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagtg 20261029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 41377135 - 41377171
Alignment:
Q  206 cccattatcacatagctcagggccctatatttcatct 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  41377135 cccattatcacatagctcagggccctatatttcatct 41377171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 6163782 - 6163828
Alignment:
Q  160 aagtgctattaaatgggcgctactaaatatcaaaattggcgtagtgc 206  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||    
T  6163782 aagtgctattaaattagcgctactaaatctcaaaattggcgtagtgc 6163828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 18237388 - 18237540
Alignment:
Q  53 tagcacttttggagaaagtgctattttagatgtaatcttatattagcacttgcaacaaaacgctattgtatttaacaaagtcagttttttgttagcactt 152  Q
    ||||| |||| |||||||||||||||||||||  |||||||| |||| |  | |  |||| |||||| ||   | || |||||| |||||| ||| | ||    
T  18237388 tagcatttttagagaaagtgctattttagatgacatcttataatagcccccgaacaaaaatgctattttaggcatcagagtcagctttttgatagtagtt 18237487  T
Q  153 tttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagtg 205  Q
      | |||||||||||||||||||||  || ||||| | |||||||||||||||    
T  18237488 cctttgaaagtgctattaaatgggcattattaaatgtaaaaattggcgtagtg 18237540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 1145 - 1086
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagt 204  Q
    ||||||||| | | ||||||||||||||| ||||||||||||| |||||||||| |||||    
T  1145 tagcactttctttaaaagtgctattaaataggcgctactaaatgtcaaaattggtgtagt 1086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 38285723 - 38285664
Alignment:
Q  145 tagcactttttctgaaagtgctattaaatgggcgctactaaatatcaaaattggcgtagt 204  Q
    ||||| ||||||| |||||||||||||||  || ||||||||| ||||||||||||||||    
T  38285723 tagcattttttctaaaagtgctattaaattagctctactaaatctcaaaattggcgtagt 38285664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 301 times since January 2019
Visitors: 3833