View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_65 (Length: 250)
Name: NF0598_high_65
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 6881259 - 6881148
Alignment:
| Q |
1 |
cctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattatggttgcttgctccaacaaactagtgtcta |
100 |
Q |
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| T |
6881259 |
cctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaagaattatggttgcttgctccaacaaactagtgtcta |
6881160 |
T |
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| Q |
101 |
ctttcaaaaacc |
112 |
Q |
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| T |
6881159 |
ctttcaaaaacc |
6881148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 6881091 - 6881005
Alignment:
| Q |
156 |
gaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcatctc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6881091 |
gaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcatctc |
6881005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 35458378 - 35458263
Alignment:
| Q |
1 |
cctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgca-aaaagttaaaaggattatggttgct---tgctccaacaaactagtg |
96 |
Q |
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| T |
35458378 |
cctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaaaattaaaaggattatagttgctcgctgctgcaacaaactggtg |
35458279 |
T |
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| Q |
97 |
tctactttcaaaaacc |
112 |
Q |
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|||| ||||||||||| |
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| T |
35458278 |
tctattttcaaaaacc |
35458263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 35458215 - 35458137
Alignment:
| Q |
164 |
tctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcatctc |
242 |
Q |
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| T |
35458215 |
tctatttcttcaagcttcaaaaaggttttctgcgaaatttattttctccgttagagggtttttctttctctttcatctc |
35458137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 3180694 - 3180758
Alignment:
| Q |
168 |
tttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctc |
233 |
Q |
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| T |
3180694 |
tttctccaagattcaaagaggttttttgcaaaatttattttctccatc-gaaggttttcctttctc |
3180758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 3180543 - 3180585
Alignment:
| Q |
15 |
cctcttaatatttaattaattaaattcattaatagtgcaaaaa |
57 |
Q |
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| T |
3180543 |
cctctaaatatttaattaaattaattcattaatagtgcaaaaa |
3180585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 24214586 - 24214521
Alignment:
| Q |
6 |
tactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattat |
71 |
Q |
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|||||||| ||||||||||||||||| ||| ||| || ||||||||||||| ||||| |||||| |
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| T |
24214586 |
tactcaaaatctcttaatatttaattagttatattaatcaatagtgcaaaaaagtaaaaagattat |
24214521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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