View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_70 (Length: 233)
Name: NF0598_high_70
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_70 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 31239723 - 31239955
Alignment:
| Q |
1 |
ctcaaagttgagtttttggctggaaagccacttccatagctggcatagaagccacttccaaaagttctatgaaacccaactttcttttgctgtagctgaa |
100 |
Q |
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| T |
31239723 |
ctcaaagttgagtttttggctggaaagccacttccatagctggcatagaagccacttccaaaagttctatgaaacccaactttcttttgctgtagctgaa |
31239822 |
T |
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| Q |
101 |
cagtactatacacatttcttgtttttgctgctgaacctgaactcttcattttcaatttatttctgtacgagagaaagatgaatctttaacaacaaatgat |
200 |
Q |
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| T |
31239823 |
cagtactatacacatttcttgtttttgctgctgaacctgaactcttcattttcaatttatttctgtacgagagaaagatgaatctttaacaacaaatgat |
31239922 |
T |
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| Q |
201 |
tatttactgtgattcatgaatcattagaaacca |
233 |
Q |
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| T |
31239923 |
tatttactgtgattcatgaatcattagaaacca |
31239955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 7914101 - 7913940
Alignment:
| Q |
81 |
tttcttttgctgtagctgaacagtactata--cacatttcttgtttttgctgctgaacctgaactcttcattttcaatttatttctgtacgagagaaaga |
178 |
Q |
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|||||| ||||| ||||||||| ||||||| |||| ||||||| |||| ||||||| |||||||||||| ||||||||||||| | || |||||||||| |
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| T |
7914101 |
tttcttgtgctgcagctgaacaatactatatacacacttcttgtgtttgttgctgaatctgaactcttcactttcaatttatttgtataggagagaaaga |
7914002 |
T |
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| Q |
179 |
tgaatctt-------taacaacaaatgattatttactgtgattcatgaatcattagaaacca |
233 |
Q |
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| T |
7914001 |
tgaatcattaacaagtaacaaccaatgattatgtactgtgattgatgaatcattaaaaacca |
7913940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 9899026 - 9899105
Alignment:
| Q |
104 |
tactatacacatttcttgtttttgctgctgaacctgaactcttcattttcaatttatttctgtacgagagaaagatgaat |
183 |
Q |
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| T |
9899026 |
tactatacacacttcttgtatttgctgctgaatctgaacactttactttgaatttatttctgtaggtgagaaagatgaat |
9899105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 9867588 - 9867693
Alignment:
| Q |
104 |
tactatacacatttcttgtttttgctgctgaacctgaactcttcattttcaatttatttctgtacgagagaaagatgaatctttaacaacaaatgattat |
203 |
Q |
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| T |
9867588 |
tactatacacacttcatatgtttgctgcttaatctgaacactttactttgaatttatttgtataggtgagaaagatgaatgattaacaaccaatgcttac |
9867687 |
T |
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| Q |
204 |
ttactg |
209 |
Q |
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|||||| |
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| T |
9867688 |
ttactg |
9867693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 7914163 - 7914123
Alignment:
| Q |
30 |
acttccatagctggcatagaagccacttccaaaagttctat |
70 |
Q |
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| T |
7914163 |
actttcatagctggcataaaagccacatccaaaagttctat |
7914123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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