View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_high_72 (Length: 228)

Name: NF0598_high_72
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_high_72
NF0598_high_72
[»] chr2 (1 HSPs)
chr2 (7-218)||(19492903-19493114)
[»] chr8 (10 HSPs)
chr8 (28-221)||(32633298-32633491)
chr8 (28-221)||(6310347-6310540)
chr8 (8-215)||(5571383-5571590)
chr8 (28-174)||(5607963-5608109)
chr8 (28-174)||(5627261-5627407)
chr8 (8-221)||(14404728-14404941)
chr8 (28-174)||(5549820-5549966)
chr8 (59-157)||(12188564-12188662)
chr8 (59-157)||(12432992-12433090)
chr8 (28-228)||(13164912-13165112)
[»] scaffold0363 (1 HSPs)
scaffold0363 (8-221)||(13912-14125)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 19493114 - 19492903
Alignment:
Q  7 caataaactttgattctagcaaagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||| |||||    
T  19493114 caataaactttgattctagcaaagttcaaatcattggaatttggggtgcaaaaggcataggtaagacagccattgttgctgctatgtttcaaaatttctc 19493015  T
Q  107 ttgcaaatatcaaggtacttgcttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactc 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  19493014 ttgcaaatatcaaggtacctgcttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcacttataaaaaacttgtttccacattactc 19492915  T
Q  207 ggggaagatgtt 218  Q
    ||||||||||||    
T  19492914 ggggaagatgtt 19492903  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 32633298 - 32633491
Alignment:
Q  28 aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttg 127  Q
    ||||||||||||||||| |||||||   |   |||||||||||||||||| ||| ||||||| ||| ||||| | |||||| ||| ||| |||| | |||    
T  32633298 aagttcaaatcattggactttggggcatggggggcataggtaagacaacccttgctgctgctttgtttcaaagggtctctttcaagtatgaaggcagttg 32633397  T
Q  128 cttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactcggggaagatgttgat 221  Q
    |||||||||||| ||| |||||| |||||||||| |||||||||||||||| |  ||||||||| |||| || |||||  |||||||| |||||    
T  32633398 cttcttagaaaatgtgacagaagtatcaaaaaggcatggaatcaatttcatatgcaacaaacttctttctaagttactaagggaagatcttgat 32633491  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 6310540 - 6310347
Alignment:
Q  28 aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttg 127  Q
    ||||||||||||||||| ||||||||  |  ||||| ||||||||||||| ||| ||||||||||| ||||| | ||||||  |||||| |||| | |||    
T  6310540 aagttcaaatcattggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttg 6310441  T
Q  128 cttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactcggggaagatgttgat 221  Q
    |||||||||||||||  |||||| |||||| ||  |||| ||||||| ||  |  ||||||||| ||||||| |||||| |||||||| |||||    
T  6310440 cttcttagaaaaggtaacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgat 6310347  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 5571383 - 5571590
Alignment:
Q  8 aataaactttgattctagcaaagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctct 107  Q
    |||||| |||||||| |  | |||||||||||||||| |||||||   |  |||||  |||||||||||  ||| ||||||||||| ||||| |||||||    
T  5571383 aataaaatttgattcaacaacagttcaaatcattggactttggggaatgggaggcactggtaagacaactcttgctgctgctatgtttcaaaggttctct 5571482  T
Q  108 tgcaaatatcaaggtacttgcttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactcg 207  Q
    | ||||||| |||| | |||||||||||||| |||| ||||||  ||||||| | |||||||||||| ||  |  ||||||||| ||||||| ||||| |    
T  5571483 ttcaaatatgaaggcaattgcttcttagaaagggtgacagaagtttcaaaaaagcatggaatcaattacacgtgcaacaaacttctttccaagttactag 5571582  T
Q  208 gggaagat 215  Q
    ||||||||    
T  5571583 gggaagat 5571590  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 5608109 - 5607963
Alignment:
Q  28 aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttg 127  Q
    ||||||||||||||||| ||||||||  |  ||||||||||||||||||| |||   ||||||||| ||||| | |||||| ||||||| | || | |||    
T  5608109 aagttcaaatcattggactttggggtatgggaggcataggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttg 5608010  T
Q  128 cttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatt 174  Q
    |||||| || |||||| |||||| |||||||||  ||||||||||||    
T  5608009 cttctttgagaaggtgacagaagtatcaaaaagtcatggaatcaatt 5607963  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 5627261 - 5627407
Alignment:
Q  28 aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttg 127  Q
    ||||||||||||||||| ||||||||  |  ||||||||||||||||||| |||   ||||||||| ||||| | |||||| ||||||| | || | |||    
T  5627261 aagttcaaatcattggactttggggtatgggaggcataggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttg 5627360  T
Q  128 cttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatt 174  Q
    |||||| || |||||| |||||| |||||||||  ||||||||||||    
T  5627361 cttctttgagaaggtgacagaagtatcaaaaagtcatggaatcaatt 5627407  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 14404728 - 14404941
Alignment:
Q  8 aataaactttgattctagca-aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctc 106  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||  |  ||||| ||||||||||||| ||| | ||  | ||| ||||| ||||||    
T  14404728 aataaaatttgattc-agcacaagttcaaatcattggaatttggggtatgggaggcacaggtaagacaacccttgcttctattctgtttcaaaggttctc 14404826  T
Q  107 ttgcaaatatcaaggtacttgcttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactc 206  Q
    || ||||||| |||| |  ||||| || ||||||||| |||||| ||| |||||| |||||||||||| |   |  ||||||||| ||||||| |||||     
T  14404827 tttcaaatatgaaggcagctgcttgtttgaaaaggtgacagaagtatcgaaaaggcatggaatcaattacgcgtgcaacaaacttctttccaagttacta 14404926  T
Q  207 ggggaagatgttgat 221  Q
     |||||||| |||||    
T  14404927 agggaagatcttgat 14404941  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 5549820 - 5549966
Alignment:
Q  28 aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttg 127  Q
    ||||||||||||||||| ||||||||  |  |||||| |||||||||||| |||   ||||||||| ||||| | |||||| ||||||| | || | |||    
T  5549820 aagttcaaatcattggagtttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttg 5549919  T
Q  128 cttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatt 174  Q
    |||||| ||||||||  |||||| |||||||||   |||||||||||    
T  5549920 cttctttgaaaaggttacagaagtatcaaaaagtcgtggaatcaatt 5549966  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 12188662 - 12188564
Alignment:
Q  59 aggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttgcttcttagaaaaggtggcagaagaatcaaa 157  Q
    ||||||||| ||||||||| ||| |||||| || | ||| ||| | |||| || |||| |||||| ||||||||||||||| ||  |||||||||||||    
T  12188662 aggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccagatatgaaggtagttgcttcttagaaaatgtcacagaagaatcaaa 12188564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 12433090 - 12432992
Alignment:
Q  59 aggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttgcttcttagaaaaggtggcagaagaatcaaa 157  Q
    ||||||||| ||||||||| ||| |||||| || | ||| ||| | |||| || |||| |||||| ||||||||||||||| ||  |||||||||||||    
T  12433090 aggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccagatatgaaggtagttgcttcttagaaaatgtcacagaagaatcaaa 12432992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 13164912 - 13165112
Alignment:
Q  28 aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctcttgcaaatatcaaggtacttg 127  Q
    ||||||||||||||||| |||||||   |   |||| ||| ||||||||| ||| |||||| |||| |||||   ||||||   | ||| ||||   |||    
T  13164912 aagttcaaatcattggagtttggggaatggggggcacaggcaagacaacccttgctgctgccatgtttcaaagagtctcttctcactatgaaggccattg 13165011  T
Q  128 cttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactcggggaagatgttgatcttacc 227  Q
    |||||||||||| ||| ||||| ||||| ||| | |||||||||||  ||  |  ||||||||| ||||||| ||||| ||||||||  ||||| |||||    
T  13165012 cttcttagaaaatgtgacagaacaatcagaaaagcatggaatcaatgacacatgcaacaaacttctttccaagttactaggggaagaccttgatattacc 13165111  T
Q  228 a 228  Q
    |    
T  13165112 a 13165112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 14125 - 13912
Alignment:
Q  8 aataaactttgattctagca-aagttcaaatcattggaatttggggtgcgaaaggcataggtaagacaaccattgttgctgctatgtatcaaaagttctc 106  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||  |  ||||| ||||||||||||| ||| | ||  | ||| ||||| ||||||    
T  14125 aataaaatttgattc-agcacaagttcaaatcattggaatttggggtatgggaggcacaggtaagacaacccttgcttctattctgtttcaaaggttctc 14027  T
Q  107 ttgcaaatatcaaggtacttgcttcttagaaaaggtggcagaagaatcaaaaaggaatggaatcaatttcatttataacaaacttgtttccaaattactc 206  Q
    || ||||||| |||| |  ||||| || ||||||||| |||||| ||| |||||| |||||||||||| |   |  ||||||||| ||||||| |||||     
T  14026 tttcaaatatgaaggcagctgcttgtttgaaaaggtgacagaagtatcgaaaaggcatggaatcaattacgcgtgcaacaaacttctttccaagttacta 13927  T
Q  207 ggggaagatgttgat 221  Q
     |||||||| |||||    
T  13926 agggaagatcttgat 13912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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