View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_8 (Length: 534)
Name: NF0598_high_8
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 205 - 515
Target Start/End: Original strand, 55301406 - 55301716
Alignment:
| Q |
205 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
304 |
Q |
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| T |
55301406 |
caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt |
55301505 |
T |
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| Q |
305 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
404 |
Q |
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| T |
55301506 |
gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg |
55301605 |
T |
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| Q |
405 |
tccttgtattctactatttttagcatgtttatgtctgtgtatatagattcctttgcttcttaatggcaggtcacagaagaatataaagacttcagcttga |
504 |
Q |
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| T |
55301606 |
tccttgtattctactatttttagcatgtttatgtctgtgtatatagattcctttgcttcttaatggcaggtcacagaagaatataaagacttcaacttga |
55301705 |
T |
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| Q |
505 |
aggtaatgcat |
515 |
Q |
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| T |
55301706 |
aggtaatgcat |
55301716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 55301230 - 55301351
Alignment:
| Q |
29 |
aggaaatatgtatgagtatctgtgggcaaccaaataccagcccaagatattggcagacttcatctgcaacagagataaagcacttcagctgaaagcattg |
128 |
Q |
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| T |
55301230 |
aggaaatatgtatgagtatctgtgggcaaccaaataccagcccaagatattggcagacttcatctgcaacagagataaagcacttcagctgaaagcattg |
55301329 |
T |
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| Q |
129 |
gtaagaagaatatgatgcttcg |
150 |
Q |
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| T |
55301330 |
gtaagaagaatatgatgcttcg |
55301351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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