View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_high_9 (Length: 520)
Name: NF0598_high_9
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 30 - 510
Target Start/End: Original strand, 3614971 - 3615441
Alignment:
| Q |
30 |
catgccaggccaattccttcagccatggcatgtagcttaggattcaagaaagtagtaaaacaacctggaaacccatcaagtcattcaccgatggattttt |
129 |
Q |
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| T |
3614971 |
catgccaggccaattccttcagccatggcatgtagcttaggattcaagaaagtagtaaaacaacctggaaacccatcaagtcattcaccgatggattttt |
3615070 |
T |
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| Q |
130 |
taatcaaatcattgaaacaacaccagattgtgaaattgtggaaacaattcataagaaggcgcggatattgggtttctagtaaggggtctgaatcatcaac |
229 |
Q |
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| T |
3615071 |
taatcaaatcattgaaacaacaccagattgtgaaattgtggagacaattcataagaaggcgtggata-----------gtaaggggtctgaatcatcaac |
3615159 |
T |
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| Q |
230 |
aagctaaaggtctgctcaccatgacatctttc-aagtctcataaggtggtcctctggtgtatcatcaagcagaaggacaaaatgattgggcgacatagct |
328 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3615160 |
aagctaaaggtcagctcaccatgacatctttctaagtctcataaggtggtcctctggtgtatcatcaagtagaaggacaaaatgattgggcgacatagct |
3615259 |
T |
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| Q |
329 |
ttcattcggactatagactttgcaccaaagcccacattgacaattactgtgatacggatggagtgataagatcatcaactatgaaattcaacaaaaataa |
428 |
Q |
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| T |
3615260 |
ttcattcggactatagactttgcaccaaagcccacattgacaattactgtgatacggatggagtgataagaacatcaactatgaaattcaacaaaaataa |
3615359 |
T |
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| Q |
429 |
agcacaaacttattggaaaagacaagtagagatcatctcaatttctcaataaaagtagatatggtgcataaagatgtctctg |
510 |
Q |
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| T |
3615360 |
agcacaaacttattggaaaagacaagtagagatcatcttaatttctcaataaaagtagatatggtgcataaagatgtctctg |
3615441 |
T |
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