View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_1 (Length: 735)
Name: NF0598_low_1
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 13118228 - 13118560
Alignment:
| Q |
30 |
atatatacctctaaaactttctttatatctaacaaaaatcaaaacttcaacttttcaataaaacatttaataaaatccctctattttactcagaaattca |
129 |
Q |
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| T |
13118228 |
atatatacctctaaaactttctttatatctaacaaaaatcaaaacttcaatttttcaataaaacattcaataaaatccctctattttactaagaaattca |
13118327 |
T |
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| Q |
130 |
gtaaaatataaaagaaacacatggaaacaaaatagattttgcagaaaaagccatt-aagaaaacagaagaaatgttgaatcaatgagacccatgaaatag |
228 |
Q |
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| T |
13118328 |
gtaaaatataaaagaaacacatggaaacaaaatagattttgcagaaaaagccattaaagaaaacagaagaaatgttgaatcaatgagacccatgaaatag |
13118427 |
T |
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| Q |
229 |
aaaagaacaataaaaggatgagtgagaaagggtgcattaccattccaacgtttggtttttgttttggtgtgagagaggacaaaggctagggttcagttca |
328 |
Q |
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| T |
13118428 |
aaaagaacaataaaagg----gtgagaaagggtgcattaccattccaacgtttggtttttgttttggtgtgagagaggacaaaggctagg-----gttca |
13118518 |
T |
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| Q |
329 |
ccaggaaaatatatttcgtacagtgcgagagtttcaacagag |
370 |
Q |
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| T |
13118519 |
ccaggaaaatatatttcgtacagtgcgagagcttcaacagag |
13118560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 473 - 726
Target Start/End: Original strand, 13118750 - 13119003
Alignment:
| Q |
473 |
attgtataaaaatgacaatgacaagaaatataagttatggtgtagcacattatgtaatttcgctacgggatgagtttgcaccatccctcactatcatgtt |
572 |
Q |
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| T |
13118750 |
attgtataaaaatgacaatgacaagaaatataagttatggtgtagcacattatgtaattccgctacgggatgagtttgcaccaaccctcactatcatgtt |
13118849 |
T |
|
| Q |
573 |
attcgaaagatttgattttgatattcaaaagagtttgctattcgatcggaacaaaagagagaattagatgagatttaggaatttagtttttgtttttagc |
672 |
Q |
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| T |
13118850 |
attagaaagatttgattttgatattcaaaagagtttgatatttgatcggaacaaaagagagaattagatgagatttaggaatttagtttttgtttttagc |
13118949 |
T |
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| Q |
673 |
tctgattttgtttgggttactttcaatttgcttccaatgccacatcattcatct |
726 |
Q |
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| T |
13118950 |
tctgattttgtttgggttactttcaatttgcttccaatgccacatcattcatct |
13119003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 426 - 486
Target Start/End: Original strand, 13118670 - 13118730
Alignment:
| Q |
426 |
cgtttaatcgttgacgttaaaaacatttgttaacggatgaggtgacaattgtataaaaatg |
486 |
Q |
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| T |
13118670 |
cgttaaatctttgacgttaaaaacgttcgttaacggatgaggtgacaattgtataaaaatg |
13118730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 21013445 - 21013386
Alignment:
| Q |
36 |
acctctaaaactttctttatatctaacaaaaatcaaaacttcaacttttcaataaaacatt |
96 |
Q |
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| T |
21013445 |
acctctaaaacttt-tttatatctaacaaaaatcaaaacttcaaattttcaataaaacatt |
21013386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 656
Target Start/End: Original strand, 2911314 - 2911349
Alignment:
| Q |
621 |
gaacaaaagagagaattagatgagatttaggaattt |
656 |
Q |
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| T |
2911314 |
gaacaaaagagagaattagatgacatttaggaattt |
2911349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 669
Target Start/End: Complemental strand, 17588837 - 17588789
Alignment:
| Q |
621 |
gaacaaaagagagaattagatgagatttaggaatttagtttttgttttt |
669 |
Q |
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||||||||||||| |||| |||||||||||| |||||| |||||||||| |
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| T |
17588837 |
gaacaaaagagaggattaaatgagatttagggatttaggttttgttttt |
17588789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 10406487 - 10406450
Alignment:
| Q |
621 |
gaacaaaagagagaattagatgagatttaggaatttag |
658 |
Q |
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| T |
10406487 |
gaacaaaagagagaattagatgacatttagggatttag |
10406450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 658
Target Start/End: Original strand, 578567 - 578604
Alignment:
| Q |
621 |
gaacaaaagagagaattagatgagatttaggaatttag |
658 |
Q |
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| T |
578567 |
gaacaaaagagggaattagatgagatttagggatttag |
578604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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