View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_10 (Length: 533)
Name: NF0598_low_10
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 126 - 525
Target Start/End: Original strand, 37160472 - 37160871
Alignment:
| Q |
126 |
gtgtttttctgtcatttgctaaccatctatattctttttgtaatttatttcctaccatgttgcaatatgttttagcaaaagattacatgttttttaatga |
225 |
Q |
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| T |
37160472 |
gtgtttttctgtcatttgctaaccatctattttctttttgtaatttatttcctaccatgttgcaatatgttttagcaaaagattacatattttttaatga |
37160571 |
T |
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| Q |
226 |
cgtattgttttctcctctgtcaaactatggatgtgcttgaagtttgttagatatatacaatttcaaacaattgtgcccaacatgcatcgcacgggtccat |
325 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37160572 |
cgtattgttttctcctctgtcacactatggatgtgcttgaagtctgttagatatatacaatttcaaacaattatgcccaacatgcatcgcacgggtccat |
37160671 |
T |
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| Q |
326 |
gatctagtgatttcaaatagagnnnnnnngaaaagaaatgataggttaccttatcatcagagccagtgctgccgatgaccctacatcctcggatcttagc |
425 |
Q |
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| T |
37160672 |
gatctagtgatttcaaatagagaaaaaaagaaaagaaatgataggttaccttatcatcagagccagtgctgccgatgaccctacatcctcggatcttagc |
37160771 |
T |
|
| Q |
426 |
cagctggccagcatttataccgacagcaccagatgcagcagatatgaacacatttgatcctggctttggatctgctagtacgtctattcccacctatgct |
525 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
37160772 |
cagctggccagcatttataccgacagcaccagatgcagcagatatgaacacatttgatcctggctttggatctgctagtacctctattcccacccatgct |
37160871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 367 - 517
Target Start/End: Original strand, 37149579 - 37149729
Alignment:
| Q |
367 |
taggttaccttatcatcagagccagtgctgccgatgaccctacatcctcggatcttagccagctggccagcatttataccgacagcaccagatgcagcag |
466 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || || |||||| | ||||| ||||||||||||||||||| |
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| T |
37149579 |
taggttaccttatcatcagagccagtgctgccaatgacccgacatcctcgtatcttagcaagttgaccagcaatcataccaacagcaccagatgcagcag |
37149678 |
T |
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| Q |
467 |
atatgaacacatttgatcctggctttggatctgctagtacgtctattccca |
517 |
Q |
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||||||||||||||||| |||||||||| | | ||||||| |||||||||| |
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| T |
37149679 |
atatgaacacatttgatgctggctttgggtttcctagtacctctattccca |
37149729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 357 - 517
Target Start/End: Original strand, 37153530 - 37153690
Alignment:
| Q |
357 |
aaagaaatgataggttaccttatcatcagagccagtgctgccgatgaccctacatcctcggatcttagccagctggccagcatttataccgacagcacca |
456 |
Q |
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||||||| |||| || ||||||||||| ||||| ||||| |||||||||| |||||||||||||||||| |||||||||||| | ||||| ||||||||| |
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| T |
37153530 |
aaagaaaagataagtcaccttatcatcggagcccgtgcttccgatgacccgacatcctcggatcttagcaagctggccagcactcatacctacagcacca |
37153629 |
T |
|
| Q |
457 |
gatgcagcagatatgaacacatttgatcctggctttggatctgctagtacgtctattccca |
517 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||||| ||| ||| |||||||||| |
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| T |
37153630 |
gatgcagcagatatgaatacatgtgatcctggttttggatctcctattacctctattccca |
37153690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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