View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_low_12 (Length: 516)

Name: NF0598_low_12
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_low_12
NF0598_low_12
[»] chr2 (1 HSPs)
chr2 (91-501)||(4752321-4752741)
[»] chr8 (1 HSPs)
chr8 (289-321)||(5776748-5776780)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 91 - 501
Target Start/End: Complemental strand, 4752741 - 4752321
Alignment:
91 gtgtcgctcatgttcttcccgtttcggatgacggtggtagcaccgccgaaatcgttcgcgtcctcggtattatctacattgcttattattaatcacttaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4752741 gtgtcgctcatgttcttcccgtttcggatgacggtggtagcaccgccgaaatcgttcgcgtcctcggtattatctacattgcttattattaatcacttaa 4752642  T
191 ttaattaattgtgtttctacattgaaaatttggggaattgttatttttactctatactcctgacacctctgatcaaggacgtgttcgacatccaccggca 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| |||||| ||    
4752641 ttaattaattgtgtttctacattgaaaatttggggaattgttatttttactctatagtactgacacctttgatcaaagacgtgttcgacacccaccgaca 4752542  T
291 catgtgattaagttgaattaattcatttaattttctcaaattattaccatgttggtgtgtca-----------gtgtccggcgatcata-nnnnnnnnag 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||         ||    
4752541 catgtgattaagttgaattaattcatttaattttctcaaattattaccatgttggtgtgtcagtgttgtgtcagtgtccggcgatcatatttttttttag 4752442  T
379 ggatttggttgattgtggtgtgtgtgcgcgcgcgttataggtggtcctgctgttggagacatacgttctaggtgtttgaggttgtctgatcaaagtacag 478  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4752441 ggatttggttgattgtg--gtgtgtgcgcgcgcgttataggtggtcctgctgttggagacatacgttctaggtgtttgaggttgtctgatcaaagtacag 4752344  T
479 cggaggatcttgcggttcgaaat 501  Q
    |||||| ||||||||||||||||    
4752343 cggaggctcttgcggttcgaaat 4752321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 5776780 - 5776748
Alignment:
289 cacatgtgattaagttgaattaattcatttaat 321  Q
    ||||||||||||||||||||||||| |||||||    
5776780 cacatgtgattaagttgaattaatttatttaat 5776748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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