View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0598_low_17 (Length: 465)
Name: NF0598_low_17
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 41 - 356
Target Start/End: Original strand, 626386 - 626701
Alignment:
| Q |
41 |
ctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaagt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626386 |
ctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaagt |
626485 |
T |
|
| Q |
141 |
tcttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtc |
240 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
626486 |
tcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctattgtc |
626585 |
T |
|
| Q |
241 |
tcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattaggggga |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
626586 |
tcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatatcttcaaaattgaatatgaaggagatgaaagaattaggggga |
626685 |
T |
|
| Q |
341 |
tgcaagcacttaattt |
356 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
626686 |
tgcaagcacttaattt |
626701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 39 - 356
Target Start/End: Original strand, 29867860 - 29868177
Alignment:
| Q |
39 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29867860 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
29867959 |
T |
|
| Q |
139 |
gttcttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29867960 |
gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg |
29868059 |
T |
|
| Q |
239 |
tctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29868060 |
tctcagaagaaatcttcaccagaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
29868159 |
T |
|
| Q |
339 |
gatgcaagcacttaattt |
356 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
29868160 |
aatgcaagcgcttaattt |
29868177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 39 - 356
Target Start/End: Complemental strand, 20786489 - 20786172
Alignment:
| Q |
39 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20786489 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
20786390 |
T |
|
| Q |
139 |
gttcttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20786389 |
gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg |
20786290 |
T |
|
| Q |
239 |
tctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20786289 |
tctcagaagaaatcttcaccagaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
20786190 |
T |
|
| Q |
339 |
gatgcaagcacttaattt |
356 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
20786189 |
aatgcaagcgcttaattt |
20786172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 39 - 356
Target Start/End: Original strand, 29469572 - 29469889
Alignment:
| Q |
39 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469572 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
29469671 |
T |
|
| Q |
139 |
gttcttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
29469672 |
gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgttg |
29469771 |
T |
|
| Q |
239 |
tctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469772 |
tctcagaagaaatcttcaccagaattatgaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
29469871 |
T |
|
| Q |
339 |
gatgcaagcacttaattt |
356 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
29469872 |
aatgcaagcgcttaattt |
29469889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 39 - 356
Target Start/End: Original strand, 19965326 - 19965643
Alignment:
| Q |
39 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965326 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
19965425 |
T |
|
| Q |
139 |
gttcttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19965426 |
gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg |
19965525 |
T |
|
| Q |
239 |
tctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965526 |
tctcagaagaaatcttcaccagaattatgaccatcaaatcagcatttgaaatatggaatttccttaaaactgaatatgaaggagatgaaagaattagggg |
19965625 |
T |
|
| Q |
339 |
gatgcaagcacttaattt |
356 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
19965626 |
aatgcaagcgcttaattt |
19965643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 39 - 356
Target Start/End: Complemental strand, 21027670 - 21027353
Alignment:
| Q |
39 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21027670 |
acctgtgtttgatggtgaaaactatcatatatgggcagcaagaatagaggcatacttagaggcaaatgacctctgggaagctgttgaggaggactacgaa |
21027571 |
T |
|
| Q |
139 |
gttcttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctg |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21027570 |
gttcttcctttgtcagacaatccaacaatggctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctg |
21027471 |
T |
|
| Q |
239 |
tctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21027470 |
tctcagaagaaatcttcaccagaattatgaccatcaaatcagcatttgaaatatggaatttccttaaaactgaatatgaaggagatgaaagaattagggg |
21027371 |
T |
|
| Q |
339 |
gatgcaagcacttaattt |
356 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
21027370 |
aatgcaagcgcttaattt |
21027353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 6368044 - 6367935
Alignment:
| Q |
41 |
ctgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaagt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
6368044 |
ctgtgtttgatggtgaaaactatcatatatgggcagcaggaatggaggcgtatttagaggcaaatgacctctgcgaagctcttgaggaggactacgaagt |
6367945 |
T |
|
| Q |
141 |
tcttcctttg |
150 |
Q |
| |
|
|||||||||| |
|
|
| T |
6367944 |
tcttcctttg |
6367935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 229 - 356
Target Start/End: Complemental strand, 6367938 - 6367811
Alignment:
| Q |
229 |
tttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaa |
328 |
Q |
| |
|
||||||| || ||||||||||||||| |||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6367938 |
tttgctgatgactcagaagaaatcttaaccaaaattatgaccatcaaaccagcatttgaaatatgaaatttcctcaaaactgaatacgaaggagatgaaa |
6367839 |
T |
|
| Q |
329 |
gaattagggggatgcaagcacttaattt |
356 |
Q |
| |
|
|||||||||| |||||||| |||||||| |
|
|
| T |
6367838 |
gaattaggggaatgcaagcgcttaattt |
6367811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 78 - 356
Target Start/End: Complemental strand, 33721950 - 33721672
Alignment:
| Q |
78 |
aaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaagttcttcctttgtcagacaatccaacaatagctcagata |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33721950 |
aaggatggaggcgtatttagaggcaaatgacctctgggaagctattgaggaggactacgaagttcttcctttgtcagacaatccaacaatggctcagata |
33721851 |
T |
|
| Q |
178 |
aaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaaat |
277 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33721850 |
acaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaaat |
33721751 |
T |
|
| Q |
278 |
cagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721750 |
cagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggatgcaagcacttaattt |
33721672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 42 - 356
Target Start/End: Complemental strand, 28699188 - 28698886
Alignment:
| Q |
42 |
tgtgtttgatggtgaaaactatcatatatgggcagcaaggatggaggcgtatttagaggcaaatgacctctgggaagctgttgaggaggactacgaagtt |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
28699188 |
tgtgtttgatggtgaaaactatcatatatgggcagcaagaat------------agaggcaaatgacctttgggaagctgttgaggaggactacaaagtt |
28699101 |
T |
|
| Q |
142 |
cttcctttgtcagacaatccaacaatagctcagataaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtct |
241 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699100 |
cttcctttgtcagacaatccaacaatggctcagataaataatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtct |
28699001 |
T |
|
| Q |
242 |
cagaagaaatcttcaccagaattatgatcatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggat |
341 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699000 |
cagaagaaatcttcaccataattataaccatcaaatcagcatttgaaatatggaatttcctcaaaactgaatatgaaggagatgaaagaattagggggat |
28698901 |
T |
|
| Q |
342 |
gcaagcacttaattt |
356 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
28698900 |
gcaaacacttaattt |
28698886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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