View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_2 (Length: 714)
Name: NF0598_low_2
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 171 - 711
Target Start/End: Original strand, 25449243 - 25449782
Alignment:
| Q |
171 |
tatatcatatgttgtgtttaatttcactgttagtttgaaattttgatatttccctcaatgccgtagaatagtgtatacatttattttatttgctaattac |
270 |
Q |
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| T |
25449243 |
tatatcatatgttgtgtttaatttcactgttagtttgaaattttgatatttccctcaatgcc-tagaatagtgtatacatttattttatttgctaattac |
25449341 |
T |
|
| Q |
271 |
taattatctagtaattttatttacgtgtttaacctcaacattgtatatccatgtagttcaactttaaagctgtggaattgttcaagaacagtcagaaatt |
370 |
Q |
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| T |
25449342 |
taattatctagtaattttatttacctgtttaacctcaacattgtatatctatgtagttcaacttcaaagctgtggaattgttcaagaacagtcagaaatt |
25449441 |
T |
|
| Q |
371 |
tcaggttctacattttttcaatcttcctttatgcctcctgagggtccacttttactatgagagccgggcttccaatttcatagagacggccttgccatat |
470 |
Q |
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| T |
25449442 |
tcaggttctacattttttcaatcttcctttatgcctcctgagggtccgcatttactatgagagccgggcttccaatttcatagagacggccttgccatat |
25449541 |
T |
|
| Q |
471 |
ccacggtcgtagcacatcttagtgctgcctgcctatttccattctctatggattccaaggattcatttatctttgtgctttccaatttgttttggagcga |
570 |
Q |
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| T |
25449542 |
ccatggtcgtagcacatcttagtgctgcctgcctatttccattctctatggattccaaggattcattcatctttgtgctttccaatttgttttggagcga |
25449641 |
T |
|
| Q |
571 |
ttctatgtttgtttacaatctcaagggtttcagtcactgcacacaatgatcacaacaatcttttcttcttctacaagcttcatgaggtatgttgttccta |
670 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25449642 |
ttctatgtttgtttccaatctcaagggtttcagtcactgcacacaatgatcacaataatcttttcttcttctacaagcttcatgaggtatgttgttccta |
25449741 |
T |
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| Q |
671 |
ttttctatcacaaaaacccccttccttgtctctgctgctcc |
711 |
Q |
| |
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| T |
25449742 |
ttttctttcacaaaaacctccttccttgtttttgctgctcc |
25449782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 260 - 409
Target Start/End: Complemental strand, 54577926 - 54577776
Alignment:
| Q |
260 |
ttgctaattactaattatctagtaattttatttacgtgtttaacctcaacattgtatatcca-tgtagttcaactttaaagctgtggaattgttcaagaa |
358 |
Q |
| |
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|||||||||||||||||| | ||||||||||| ||| |||||||||||||||| || | | | |||||||||| | || ||||||| ||||||| |
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| T |
54577926 |
ttgctaattactaattatatcttaattttattttatggttcaacctcaacattgtatgtctaatatggttcaactttgacattgcggaattgctcaagaa |
54577827 |
T |
|
| Q |
359 |
cagtcagaaatttcaggttctacattttttcaatcttcctttatgcctcct |
409 |
Q |
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|||||| ||||| ||||| || | ||||||||||||||| |||||||||| |
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| T |
54577826 |
cagtcaagaattttaggttttatactttttcaatcttcctctatgcctcct |
54577776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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