View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_20 (Length: 457)
Name: NF0598_low_20
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 71 - 447
Target Start/End: Original strand, 11574541 - 11574917
Alignment:
| Q |
71 |
tcgaactcatgcttagatttgaatccaatacgtttgtttaaacttaaacatttgactggggcttttnnnnnnnnngtgttttcagtggtttatatatttt |
170 |
Q |
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| T |
11574541 |
tcgaactcatgcctagatttgaatccaatatgtttgcttaaacttaaacatttgaccggggcttttagaaaaaaagtgttttcagtggtttatatatttc |
11574640 |
T |
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| Q |
171 |
tcgaataggatcaatttgttttaatcttagtttaaattnnnnnnn-gtgttttgatttaacatgaagattgaatttaaatgtattgtctccaaacatttt |
269 |
Q |
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| T |
11574641 |
tcgaataggatcaatttgttttaatcttaatttaaattaaaaaaaagtgttttgatttaacatgaagattgaatttaaatgtattgtctccaatcatttt |
11574740 |
T |
|
| Q |
270 |
ttaacctcaaattcatcttacaactcgcaattgtgtnnnnnnnnttaatcaactcacactttatataaatttatcaaaaaactatgttacattaaattca |
369 |
Q |
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| T |
11574741 |
ttaacctcaaattcatcgtacaactcgcaattgtgtaaaaaaa-ttaatcaactcacattttatataaatttatcaaaaaattatgttacattaaattca |
11574839 |
T |
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| Q |
370 |
tttttatgataatacattcaactcatttattgttctcttattttacatgtctaataaaaatttaattcatcatattgt |
447 |
Q |
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| T |
11574840 |
tttttatgataatacattcaactcatttattgttctcttattttacatgtctaataaaaatttaattcatcattttgt |
11574917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 224 - 447
Target Start/End: Original strand, 11573367 - 11573602
Alignment:
| Q |
224 |
atttaacatgaagattgaatttaaatgtattgtctccaaacattttttaacctcaaattcatcttacaactcgcaattgtgtnnnnnnnn--ttaatcaa |
321 |
Q |
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| T |
11573367 |
atttaacataaagatgaaatttaaatatattgtctccaaacattttt-aacttcaagctcattgtacaactcacaattgtgtaaaaaaaaaattgatcaa |
11573465 |
T |
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| Q |
322 |
ctcacactttatataaatttatcaaaaaactatgttacattaaattcatttttatgataat-----------acattcaactcatttattgttctcttat |
410 |
Q |
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| T |
11573466 |
ctcacattttacataaatttatcaaaaagttatgttacattaaattcatttttataataattaattaattatacattcagctcatttattgttctcttat |
11573565 |
T |
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| Q |
411 |
tttacatgtctaataaaaatttaattcatcatattgt |
447 |
Q |
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| T |
11573566 |
tttacatgcctaataaaaaattaattcatcattttgt |
11573602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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