View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_21 (Length: 451)
Name: NF0598_low_21
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 39 - 309
Target Start/End: Complemental strand, 26635252 - 26634982
Alignment:
| Q |
39 |
ttattaacaaacacattttcatatcaaatctcatgcaaaactcttaaatatgttaatggtttacttagaataactaaccctttttggctctttggtttgt |
138 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
26635252 |
ttattaacaaacacattttcatatcaaatctcatacaaaattcttaaatatgttaatggtttacatagaataactaaccctttttagctctttggtttgt |
26635153 |
T |
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| Q |
139 |
agttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26635152 |
agttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattt |
26635053 |
T |
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| Q |
239 |
tttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
309 |
Q |
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| T |
26635052 |
tttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
26634982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 26627824 - 26627574
Alignment:
| Q |
54 |
ttttcatatcaaatctcatgcaaaactcttaaatatgttaatggtttacttagaataactaaccctttttggctctttggtttgtagttgaaggactctt |
153 |
Q |
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|||| |||||| ||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
26627824 |
ttttaatatcatatcacgtgcaaaactcttaaatatgttaatggtttacttagtatgactaaccctttttggatctttggtttatagttgaaggactctt |
26627725 |
T |
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| Q |
154 |
ttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattttttcagcataggcaa |
253 |
Q |
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| T |
26627724 |
ttgtttgaatcttttggtataatttaaaagtgctatgaggttgaattgatgtttttggaatgta-----tgaggatcctccattttttgagcataggcaa |
26627630 |
T |
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| Q |
254 |
ctgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgcctttttc |
309 |
Q |
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| T |
26627629 |
ctgcctcccaaaaagatttgtaagttgagttggggacaaacaaatttgcctttttc |
26627574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 39 - 272
Target Start/End: Complemental strand, 26612340 - 26612116
Alignment:
| Q |
39 |
ttattaacaaacacattttcatatcaaatctcatgcaaaactcttaaatatgttaatggtttacttagaataactaaccctttttggctctttggtttgt |
138 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
26612340 |
ttattaacaaaca--ttttcatatcaaatctcatacaaaactgcta-------taatggtttacttagaataactaaccctttttggatctttcgtttgt |
26612250 |
T |
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| Q |
139 |
agttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggaggatcttcaattt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || |||| |
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| T |
26612249 |
agttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgtttttggaaggtaggaggggaggatcctctattt |
26612150 |
T |
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| Q |
239 |
tttcagcataggcaactgcctcccaaaagcattt |
272 |
Q |
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| T |
26612149 |
tatcagcataggcaactgcctcccaaaagtattt |
26612116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 127 - 308
Target Start/End: Complemental strand, 26648268 - 26648088
Alignment:
| Q |
127 |
tctttggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggag |
226 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||||| |
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| T |
26648268 |
tctttggtttgtagttgaaggactcttgtctttgaatatttaggtataatctaaaagtgttactaagttgaattgatgtttttggaacgtaggaggggag |
26648169 |
T |
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| Q |
227 |
gatcttcaattttttcagcataggcaactgcctcccaaaagcatttgtaagttgagtaggggacaaacaaatttgccttttt |
308 |
Q |
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|||| || ||||||||||||| ||||||| ||||||||||||||||| | |||| || ||||||| |||||||||||||| |
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| T |
26648168 |
gatcctctattttttcagcattggcaactacctcccaaaagcatttgcatgttgggt-taggacaaagaaatttgccttttt |
26648088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 127 - 273
Target Start/End: Complemental strand, 26715720 - 26715574
Alignment:
| Q |
127 |
tctttggtttgtagttgaaggactcttttgtttgaatctttaggtataatctaaaagtgctatgaggttgaattgatgttttgggaatgtaggaggggag |
226 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| || | |||||||||||||||| |||| |||||||||||| |
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| T |
26715720 |
tctttggtttgtagttgaaggactcttgtctttgaatatttaggtataatctaaaagtgttactaagttgaattgatgtttttggaacgtaggaggggag |
26715621 |
T |
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| Q |
227 |
gatcttcaattttttcagcataggcaactgcctcccaaaagcatttg |
273 |
Q |
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|||| || ||||||||||||| | ||||| ||||||||||||||||| |
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| T |
26715620 |
gatcctctattttttcagcattgacaactacctcccaaaagcatttg |
26715574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 26634920 - 26634888
Alignment:
| Q |
370 |
cattttaatgtgacataaggggattcatctcac |
402 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
26634920 |
cattttaatgtgacataaggggattcatttcac |
26634888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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