View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_22 (Length: 447)
Name: NF0598_low_22
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Original strand, 3249129 - 3249530
Alignment:
| Q |
30 |
gttgtgtagttcagtagcagcctgttcagattgtgtattttcattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtt |
129 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
3249129 |
gttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtt |
3249228 |
T |
|
| Q |
130 |
tctttatgcatcaaatcagagccatctagattcttgctaggaagagagtgtgagtcttttcgagcaccagagagcttgcccaacgtgtcagcatcaacct |
229 |
Q |
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||||||||||||||||||| ||| | ||||||||| ||| | ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |
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| T |
3249229 |
tctttatgcatcaaatcagtgccctttagattctttctatgcagagagtgtgagtcttttctagcaccagagaccttgcccaacatgtcagcatcaacct |
3249328 |
T |
|
| Q |
230 |
gtttcttgccactcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccattcaatttcctacaatcacatgcacattaagtcgt |
329 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249329 |
gtttcttgccattcaaatcatttttggttttcaatttgacaggtccttcagtgttgtttgatccattcaatttcctacaatcacatgcacattaagtcgt |
3249428 |
T |
|
| Q |
330 |
gaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtactgtactgtttatatgtataagccaagcaca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249429 |
gaattattttcattagtgttgtctccttccttgcattagtagtaaattcttttcaatcaatcaatagtactgtactgtttatatgtataagccaagcaca |
3249528 |
T |
|
| Q |
430 |
gg |
431 |
Q |
| |
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|| |
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|
| T |
3249529 |
gg |
3249530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 36905501 - 36905221
Alignment:
| Q |
30 |
gttgtgtagttcagtagcagcctgttcagattgtgtattttcattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtt |
129 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || | |
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| T |
36905501 |
gttgtgtagttcagtagcagcctgtttagattgtgcattttcagtattggtggtttcaaggtcgaaaatcttaacaggggagttcacaaactcagcaata |
36905402 |
T |
|
| Q |
130 |
tctttatgcatcaaatcagagccatctagattcttgctaggaagagagtgtgagtcttttcgagcaccagagagcttgcccaacgtgtcagcatcaacct |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| | |||||||||| || |||||||||||| |
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| T |
36905401 |
tctttatgcatcaaatcagagccatctagattcttggtaggcagagagtgtgagtcttttcaagcaccagataccttgcccaacatgacagcatcaacct |
36905302 |
T |
|
| Q |
230 |
gtttcttgccactcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccattcaatttcctacaat |
310 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
36905301 |
gtttcttgccattcaaatcatttctggttttcaatttgacagatccttcagtgttgtttgatccattcagtttcctacaat |
36905221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 3243408 - 3243455
Alignment:
| Q |
328 |
gtgaattattttcattagtgttgtctccttccttgcattagtagtaaa |
375 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3243408 |
gtgaattattctcattggtgttgtctccttccttgcattagtagtaaa |
3243455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 28102502 - 28102782
Alignment:
| Q |
30 |
gttgtgtagttcagtagcagcctgttcagattgtgtattttcattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102502 |
gttgtgtagttcagtagcagcctgttcagattgtgtattttcattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtt |
28102601 |
T |
|
| Q |
130 |
tctttatgcatcaaatcagagccatctagattcttgctaggaagagagtgtgagtcttttcgagcaccagagagcttgcccaacgtgtcagcatcaacct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102602 |
tctttatgcatcaaatcagagccatctagattcttgctaggaagagagtgtgagtcttttcgagcaccagagagcttgcccaacgtgtcagcatcaacct |
28102701 |
T |
|
| Q |
230 |
gtttcttgccactcaaatcatttctggttttcaatttgacaggtccttcagtgttgtttgatccattcaatttcctacaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
28102702 |
gtttcttgccactcaaatcatttctggttttcaatttgacaggtccgtcagtgttgtttgatccattcagtttcctacaat |
28102782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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