View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_24 (Length: 428)
Name: NF0598_low_24
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_24 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 428
Target Start/End: Complemental strand, 36290765 - 36290367
Alignment:
| Q |
30 |
gccacgtggacaaggaatctgcacaagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaactcttgttagaattcaatagcaaa |
129 |
Q |
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| T |
36290765 |
gccacgtggacaaggaatctgcacgagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaactcttgttagaattcaatggcaaa |
36290666 |
T |
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| Q |
130 |
acagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacat |
229 |
Q |
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| T |
36290665 |
acagttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacat |
36290566 |
T |
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| Q |
230 |
tgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatca |
329 |
Q |
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| T |
36290565 |
tgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatca |
36290466 |
T |
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| Q |
330 |
gattaaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattag |
428 |
Q |
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| T |
36290465 |
gattaaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgctactgttgattttacaacttgtgagtctattag |
36290367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 133 - 428
Target Start/End: Complemental strand, 36313145 - 36312850
Alignment:
| Q |
133 |
gttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattga |
232 |
Q |
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| T |
36313145 |
gttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactccactgactttga |
36313046 |
T |
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| Q |
233 |
ttgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagat |
332 |
Q |
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|||| |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
36313045 |
ttgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagat |
36312946 |
T |
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| Q |
333 |
taaagatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattag |
428 |
Q |
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| T |
36312945 |
taaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattag |
36312850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 15997153 - 15997211
Alignment:
| Q |
364 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtc |
422 |
Q |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtc |
15997211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
297 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
358 |
Q |
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| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 33579845 - 33579787
Alignment:
| Q |
364 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtc |
422 |
Q |
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|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtc |
33579787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
297 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
380 |
Q |
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||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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