View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_27 (Length: 398)
Name: NF0598_low_27
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 11136007 - 11135926
Alignment:
| Q |
81 |
agattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaaccatactgtact |
162 |
Q |
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| T |
11136007 |
agattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaacaatactgtact |
11135926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 23259264 - 23259358
Alignment:
| Q |
82 |
gattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaacca---tactgtactatcaatattgg |
173 |
Q |
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| T |
23259264 |
gattcaggtagcacaattccagcaactccacttcctgtttcatcaaattttcaccattaagtatctcaacaattctactatactatcaatattgg |
23259358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 23277142 - 23277234
Alignment:
| Q |
82 |
gattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaacca---tactgtactatcaatatt |
171 |
Q |
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| T |
23277142 |
gattcaggtagcacaattccagcaactccacttcctgttacaacaaatcatcactattaagtatctcaacaattctactatactatcaatatt |
23277234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 27543667 - 27543761
Alignment:
| Q |
82 |
gattcaggtagcacaattccagcaactccacttcctgtttcatcaaatcttcaccattaagtatctcaacca---tactgtactatcaatattgg |
173 |
Q |
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| T |
27543667 |
gattcaggtagcacaattccagcaactccacttcctgtatcaacaaatctttgccattaagaatctcaacaattctactatactatcaatattgg |
27543761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 11135820 - 11135753
Alignment:
| Q |
268 |
aaccataccagaaaaacaaaatcaaacaacannnnnnnaaaataatcagttttagaaaattcaatctgt |
336 |
Q |
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| T |
11135820 |
aaccataccagaaaaacaaaatcaaacaacatttttt-aaaataatcagttttagaaaattcaatctgt |
11135753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 11135299 - 11135263
Alignment:
| Q |
333 |
ctgtcagacacatatgcaatcgtgtccgtgtgtatgc |
369 |
Q |
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| T |
11135299 |
ctgtcagacacatatgcaatcgtgtcagtgtgtatgc |
11135263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 13414221 - 13414186
Alignment:
| Q |
12 |
ataggtgaaaaaagttggttgaacgtgcgttctatg |
47 |
Q |
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| T |
13414221 |
ataggtgaaaagagttggttgaacgtgcgttctatg |
13414186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 41225053 - 41225102
Alignment:
| Q |
26 |
ttggttgaacgtgcgttctatgagagctatcttgttgttgtttgaggagg |
75 |
Q |
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| T |
41225053 |
ttggttgaatgttcgttctatgagggctgttttgttgttgtttgaggagg |
41225102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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