View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_29 (Length: 391)
Name: NF0598_low_29
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 53561791 - 53562164
Alignment:
| Q |
1 |
cggatgtcgaagaatattggcgttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtgagggaaga |
100 |
Q |
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| T |
53561791 |
cggatgttgaagacgattggcgttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtgagggaaga |
53561890 |
T |
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| Q |
101 |
gagccttcatgaactagagaggagggtgtttaagcatatttggaagagtccggcg-cgaccaaggtcgttgtcttctcgtggaaactcctctatgataga |
199 |
Q |
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| T |
53561891 |
gagccttgatgaactagagaggagggtgtttaagcatatttggaagagtccggcgccgtccaaggtcgttgtcttctcgtggaaactcctccatgataga |
53561990 |
T |
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| Q |
200 |
attcctacaaagattaatctagctattaggaattgtttcccgccggatacatcttatgagtg----------aataacgcggctgaagatgctactcatt |
289 |
Q |
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| T |
53561991 |
attcctacgaagattaatctagctattaggaattgtttcccaccggatacatcttatgagtgtgtgtggtgtaataacacggctgaagatgctactcatt |
53562090 |
T |
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| Q |
290 |
tatttcttcattgtgaaggggtgaaggtggtttggtgtaagatcatggaatggttggactttaattttataatt |
363 |
Q |
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| T |
53562091 |
tatttcttcattgtgaaggggtgaaggtggtttggtgtaagatcatggaatggttggactttaattttataatt |
53562164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 34821823 - 34821779
Alignment:
| Q |
48 |
ttttcggttaaatctatgtattccaaattggaaacattgatggtg |
92 |
Q |
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| T |
34821823 |
ttttcggtaaaatcaatgtattctagattggaaacattgatggtg |
34821779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 4903369 - 4903435
Alignment:
| Q |
23 |
ttggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatg |
89 |
Q |
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| T |
4903369 |
ttggaggttggatgaggaaggtgctttttcggtaaaatcaatgtattctaaattggaaacattgatg |
4903435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 1556846 - 1556915
Alignment:
| Q |
24 |
tggagtttggaagaggacggtactttttcggttaaatctatgtattccaaattggaaacattgatggtga |
93 |
Q |
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| T |
1556846 |
tggaggttggaggaggacggagctttctcggtcaaatcaatgtattcaaaattggaaacaaggatggtga |
1556915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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