View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_30 (Length: 390)
Name: NF0598_low_30
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 44692696 - 44692403
Alignment:
| Q |
1 |
ctccacctattctccacaatccagctaccttcaagcttccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtct |
100 |
Q |
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| T |
44692696 |
ctccacctattctccacaatccagctaccttcaagcttccccatacatagatttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtct |
44692597 |
T |
|
| Q |
101 |
tcaccatgagtccacacatgcccctccaaatcctccaataaattatttaacaattgttcctcccacacnnnnnnncgccactccaccaccggcccattat |
200 |
Q |
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| T |
44692596 |
tcaccatgagtccacacatgcccctccaaatcctccaataaattatttaacaattgttcctcccacacaaaaaaacgccactccaccaccggcccattat |
44692497 |
T |
|
| Q |
201 |
tcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctccatct |
294 |
Q |
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| T |
44692496 |
tcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctagaatatttacctcgaaagggaactccacccctccatct |
44692403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 34866505 - 34866639
Alignment:
| Q |
10 |
ttctccacaatccagctaccttcaagcttccccatacatagatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatga |
109 |
Q |
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|||||||||||||| || ||||||| |||| | |||||||||||| ||||| || ||||| || ||||| | | |||| ||||| ||||||||| | | |
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| T |
34866505 |
ttctccacaatccatctcccttcaaacttcgc-atacatagatttcaccgtgaatttcccttcgtcttccatcctccacacccatctgtcttcaccgtta |
34866603 |
T |
|
| Q |
110 |
gtccacacatgcccctccaaatcctccaataaatta |
145 |
Q |
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| T |
34866604 |
gaccacacatgcccctccaaatcttccaataaatta |
34866639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 34866690 - 34866777
Alignment:
| Q |
178 |
ccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatattta |
265 |
Q |
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||||||||||| ||| || |||||||||| || | ||| |||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
34866690 |
ccactccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatctaggatattta |
34866777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 12830121 - 12830039
Alignment:
| Q |
209 |
atattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctcca |
291 |
Q |
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|||| ||||||||| ||||||||||||||| |||| | ||| ||||| ||||||||| | || |||| ||| ||||||||||| |
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| T |
12830121 |
atatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccctcca |
12830039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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