View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_low_31 (Length: 386)

Name: NF0598_low_31
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_low_31
NF0598_low_31
[»] chr4 (7 HSPs)
chr4 (14-377)||(51295322-51295670)
chr4 (15-97)||(5653162-5653244)
chr4 (15-94)||(42665092-42665171)
chr4 (15-92)||(18395638-18395715)
chr4 (15-83)||(52545107-52545175)
chr4 (15-88)||(23985933-23986006)
chr4 (14-83)||(24807582-24807651)
[»] chr6 (7 HSPs)
chr6 (14-97)||(33869405-33869488)
chr6 (15-96)||(15866740-15866821)
chr6 (15-96)||(15868552-15868633)
chr6 (15-96)||(33866259-33866340)
chr6 (15-88)||(14611242-14611315)
chr6 (55-96)||(24544818-24544859)
chr6 (15-89)||(32080097-32080169)
[»] chr7 (8 HSPs)
chr7 (15-96)||(37405440-37405521)
chr7 (15-89)||(21632958-21633032)
chr7 (15-83)||(34844213-34844281)
chr7 (15-72)||(21633205-21633262)
chr7 (15-72)||(21631244-21631301)
chr7 (15-89)||(29597970-29598044)
chr7 (15-89)||(21630993-21631071)
chr7 (14-72)||(3233059-3233117)
[»] chr1 (7 HSPs)
chr1 (15-96)||(3284662-3284743)
chr1 (15-97)||(9312189-9312271)
chr1 (15-96)||(3282961-3283042)
chr1 (15-96)||(9310572-9310653)
chr1 (15-97)||(902236-902318)
chr1 (15-94)||(41892248-41892327)
chr1 (14-96)||(33072898-33072980)
[»] chr5 (2 HSPs)
chr5 (15-95)||(39787050-39787130)
chr5 (15-89)||(21637131-21637205)
[»] scaffold0251 (1 HSPs)
scaffold0251 (15-83)||(6386-6454)
[»] scaffold0057 (1 HSPs)
scaffold0057 (15-96)||(58944-59025)
[»] chr8 (5 HSPs)
chr8 (51-96)||(14939709-14939754)
chr8 (51-96)||(19473726-19473771)
chr8 (51-96)||(19544651-19544696)
chr8 (51-96)||(19588000-19588045)
chr8 (52-97)||(950081-950126)
[»] chr3 (1 HSPs)
chr3 (15-96)||(9032695-9032776)
[»] scaffold0060 (1 HSPs)
scaffold0060 (15-72)||(8972-9029)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 51295322 - 51295670
Alignment:
Q  14 atatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaacaccgattacttgttatga 113  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| |||||||     
T  51295322 atatctcccacatgaatacacctatgctctctttctagctgatcactatgatctttatccttaggattccataattactaacaccggttacctgttatgg 51295421  T
Q  114 agcactacacaacaaagggaaagaaaaattaacgatctcttttatctaaagtaggtatcaacacaccaaacgaaaatcttaaagagatgccataagtata 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51295422 agcactacacaacaaagggaaagaaaagttaacgatctcttttatctaaagtaggtatcaacacaccaaacgaaaatcttaaagagatgccataagtata 51295521  T
Q  214 tgggtttttctcatttcaccctttcatgccaaacattattgagtttgatcatgtgtcacttattgtgagatagaggggtgaacttctatatttggtctta 313  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||    
T  51295522 tgggtttttctcatttcaccctttcacgccaaacattattgagtttgatcatgtgtcac---------------ggggtgaacttctatatttggtctta 51295606  T
Q  314 cttgtcataattgattattctatatcatattaatttttcatattagaattgatgtgtggatatt 377  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51295607 cttgtcataattgattattctatatcatattaattttttatattagaattgatgtgtggatatt 51295670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5653244 - 5653162
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaacac 97  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || | |||||||||||||||||||    
T  5653244 tatctcccacatgaatacacctatgctctctttctagctgatcactatgatctttatccttggcattccatgattactaacac 5653162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 42665092 - 42665171
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaa 94  Q
    ||||||||| || ||||| | |||| ||||||| |||| ||||||||||| ||||||| |||| ||| ||||||||||||    
T  42665092 tatctcccagataaatactcttatgctctctttctagccgatcactatgacctttatccttagaatttcatgattactaa 42665171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 18395715 - 18395638
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattact 92  Q
    |||||||||||||||||| | |||| ||||||| | ||| |||||||||| |||||||  | ||||| ||||||||||    
T  18395715 tatctcccacatgaatactcttatgctctctttcttgctaatcactatgacctttatccgtgggatttcatgattact 18395638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 52545175 - 52545107
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattcc 83  Q
    |||||||||||||| ||| | |||| || |||| | |||||||||||||||||||||| || |||||||    
T  52545175 tatctcccacatgagtactcttatgctcgctttcttgctgatcactatgatctttatccttgggattcc 52545107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 23985933 - 23986006
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgat 88  Q
    |||||||||||||||||   ||||| ||||| | ||||||||  |||||||||||||| || ||||||| ||||    
T  23985933 tatctcccacatgaatattactatgctctctctctagctgatgtctatgatctttatccttgggattccttgat 23986006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 24807582 - 24807651
Alignment:
Q  14 atatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattcc 83  Q
    |||||||||||||||||||  ||||| ||||| | ||||| ||  |||||||||||||| || |||||||    
T  24807582 atatctcccacatgaatactactatgctctctctctagctaatatctatgatctttatccttgggattcc 24807651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 33869405 - 33869488
Alignment:
Q  14 atatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaacac 97  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  33869405 atatctcccacatgaatacacctatgctctctttctagctgatcactatgatctttatctttgggattccttgattactaacac 33869488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 15866740 - 15866821
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||    
T  15866740 tatctcccacatgaatacacatatgctctctttctagctgatcactatgatctttatccttgggattccttgattactaaca 15866821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 15868552 - 15868633
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||    
T  15868552 tatctcccacatgaatacacatatgctctctttctagctgatcactatgatctttatccttgggattccttgattactaaca 15868633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 33866259 - 33866340
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||||| ||||||||||||    
T  33866259 tatctcccacatgaatacacctatgctctctttctagctgatcactatgatcttaatccttgggattccttgattactaaca 33866340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 14611242 - 14611315
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgat 88  Q
    ||||||||||||||||||  ||||| ||||| | ||||||||  |||||||||||||||||  |||||| ||||    
T  14611242 tatctcccacatgaatactactatgctctctctctagctgatatctatgatctttatctttcagattccttgat 14611315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 24544818 - 24544859
Alignment:
Q  55 atcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  24544818 atcactatgatctttatccttgggattccatgattactaaca 24544859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 32080097 - 32080169
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgatt 89  Q
    |||||| |||||||||||  ||||| ||||| |  |||||||||||||||||||||||  | |||||||||||||    
T  32080097 tatctctcacatgaatactactatgctctctct--agctgatcactatgatctttatccatgggattccatgatt 32080169  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 37405521 - 37405440
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37405521 tatctcccacatgaatacacctatgctctctttctagctgatcactatgatctttatccttgggattccttgattactaaca 37405440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 21633032 - 21632958
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgatt 89  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||  | |||||||||||||    
T  21633032 tatctcccacatgaatacacctatgctctcttttcagctgatcactgtgatctttatccatgggattccatgatt 21632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 34844213 - 34844281
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattcc 83  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| || |||||||    
T  34844213 tatctcccacatgaatacacctatgctctctttctagttgatcactatgatctttatccttgggattcc 34844281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 21633262 - 21633205
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatc 72  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  21633262 tatctcccacatgaatacatctatgctctctttctagctgatcactatgatctttatc 21633205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 21631301 - 21631244
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatc 72  Q
    |||||||||||| |||||||||||| ||||||| |||||||||| |||||||||||||    
T  21631301 tatctcccacattaatacacctatgctctctttctagctgatcaatatgatctttatc 21631244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 29598044 - 29597970
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgatt 89  Q
    |||||||||||||||||| | |||| ||||||| | |||||||||||||| |||||||  | |||||||||||||    
T  29598044 tatctcccacatgaatactcttatgctctctttcttgctgatcactatgacctttatccctgggattccatgatt 29597970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 21631071 - 21630993
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatc----actatgatctttatctttaggattccatgatt 89  Q
    |||||||||||| |||| ||||||| ||||||| |||||||||    |||||||||||||||  |||||||||||||||    
T  21631071 tatctcccacattaatagacctatgctctctttctagctgatcgatcactatgatctttatccctaggattccatgatt 21630993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 3233059 - 3233117
Alignment:
Q  14 atatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatc 72  Q
    ||||||||||||||||||| | |||| ||||||| | |||||||||| ||| |||||||    
T  3233059 atatctcccacatgaatactcttatgctctctttcttgctgatcactgtgacctttatc 3233117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 3284662 - 3284743
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||| ||||||||||||    
T  3284662 tatctcccacatgaatacacctatgctctctttctagctgatcactatgatctttatccttgggattccttgattactaaca 3284743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 9312189 - 9312271
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaacac 97  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| || ||||||| |||||||||||||    
T  9312189 tatctcccacatgaatacacatatgctctctttctagctgatcactatgatctttatccttgggattccttgattactaacac 9312271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 3282961 - 3283042
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| || ||||||| ||||||||||||    
T  3282961 tatctcccacatgaatacacctatgctctctttctagttgatcactatgatctttatccttgggattccttgattactaaca 3283042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 9310572 - 9310653
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||  |||||| ||||||||||||    
T  9310572 tatctcccacatgaatacacatatgctctctttctagctgatcactatgatctttatccttgagattccttgattactaaca 9310653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 902236 - 902318
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaacac 97  Q
    ||||||||||||||||||||||||| ||||||| || ||||||| ||||||||||||| || | ||| | |||||||||||||    
T  902236 tatctcccacatgaatacacctatgctctctttctaactgatcattatgatctttatccttggaatttcttgattactaacac 902318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 41892248 - 41892327
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaa 94  Q
    ||||| ||||||||||||   ||||||  |||||| ||| | || ||||||||||||| |||||||||||||||||||||    
T  41892248 tatcttccacatgaatactattatgtttgcttttttgctaaacattatgatctttatccttaggattccatgattactaa 41892327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 33072898 - 33072980
Alignment:
Q  14 atatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    ||||||||||||||||||| | |||| ||||||| | |||||||| ||||| |||||||  |  ||||||||||| |||||||    
T  33072898 atatctcccacatgaatactcttatgatctctttcttgctgatcattatgacctttatccctgagattccatgatgactaaca 33072980  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 39787130 - 39787050
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaac 95  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||  |||||| |||||||||||    
T  39787130 tatctcccacatgaatacacatatgctctctttctagctgatcactatgatctttatccttgagattccttgattactaac 39787050  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 21637205 - 21637131
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgatt 89  Q
    ||||| |||||||||||| | |||||||||||| |  ||||||| |||||||||||||  | |||||||||||||    
T  21637205 tatcttccacatgaatactcttatgttctctttcttactgatcattatgatctttatccatgggattccatgatt 21637131  T

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Target: scaffold0251 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 6386 - 6454
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattcc 83  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| || |||||||    
T  6386 tatctcccacatgaatacatctatgctctctttctagctgatcactatgatctttatccttgggattcc 6454  T

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Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 58944 - 59025
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||| ||| | |||| |  |||| | |||||||||||||||||||||| || ||||||||||||||||||||    
T  58944 tatctcccacatgagtactcttatgcttgctttcttgctgatcactatgatctttatccttgggattccatgattactaaca 59025  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 14939709 - 14939754
Alignment:
Q  51 gctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  14939709 gctgatcactatgatctttatccttaggattccatgattactaaca 14939754  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 19473726 - 19473771
Alignment:
Q  51 gctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  19473726 gctgatcactatgatctttatccttgggattccatgattactaaca 19473771  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 19544651 - 19544696
Alignment:
Q  51 gctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  19544651 gctgatcactatgatctttatccttgggattccatgattactaaca 19544696  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 19588045 - 19588000
Alignment:
Q  51 gctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  19588045 gctgatcactatgatctttatccttgggattccatgattactaaca 19588000  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 950126 - 950081
Alignment:
Q  52 ctgatcactatgatctttatctttaggattccatgattactaacac 97  Q
    |||||||||||||||| ||||| | ||| |||||||||||||||||    
T  950126 ctgatcactatgatctctatctctgggaatccatgattactaacac 950081  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 9032776 - 9032695
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatctttaggattccatgattactaaca 96  Q
    |||||||||||||||||  | |||||||||||||| |||||||| ||||  |||||||  | ||||| |||||| |||||||    
T  9032776 tatctcccacatgaatattcgtatgttctcttttttgctgatcattatgtactttatccctgggatttcatgataactaaca 9032695  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 9029 - 8972
Alignment:
Q  15 tatctcccacatgaatacacctatgttctctttttagctgatcactatgatctttatc 72  Q
    ||||| |||||||||||| | |||||||||||| | |||||||| ||| |||||||||    
T  9029 tatcttccacatgaatactcttatgttctctttcttgctgatcattataatctttatc 8972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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