View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0598_low_4 (Length: 686)

Name: NF0598_low_4
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0598_low_4
NF0598_low_4
[»] chr1 (14 HSPs)
chr1 (99-675)||(41955666-41956225)
chr1 (392-460)||(8463040-8463108)
chr1 (317-377)||(26990673-26990733)
chr1 (389-456)||(31833895-31833960)
chr1 (525-587)||(52935180-52935243)
chr1 (525-587)||(52942815-52942878)
chr1 (525-587)||(52946223-52946286)
chr1 (525-593)||(18136444-18136514)
chr1 (317-377)||(12173026-12173086)
chr1 (317-367)||(19472882-19472932)
chr1 (317-375)||(28447793-28447851)
chr1 (325-367)||(42442015-42442057)
chr1 (525-576)||(11398292-11398344)
chr1 (390-438)||(47028948-47028996)
[»] chr4 (4 HSPs)
chr4 (493-585)||(5373898-5373990)
chr4 (494-582)||(17225259-17225347)
chr4 (317-377)||(15186981-15187041)
chr4 (402-438)||(32183294-32183330)
[»] chr5 (3 HSPs)
chr5 (493-591)||(20319538-20319636)
chr5 (317-367)||(42241589-42241639)
chr5 (324-369)||(819136-819181)
[»] chr2 (3 HSPs)
chr2 (324-460)||(41419613-41419745)
chr2 (323-369)||(43356763-43356809)
chr2 (324-367)||(38908751-38908794)
[»] chr8 (5 HSPs)
chr8 (317-377)||(24200622-24200682)
chr8 (317-438)||(5200482-5200598)
chr8 (317-369)||(22839334-22839386)
chr8 (324-367)||(38086421-38086464)
chr8 (330-371)||(2319013-2319054)
[»] chr6 (3 HSPs)
chr6 (317-369)||(6575805-6575857)
chr6 (396-456)||(11546765-11546825)
chr6 (402-456)||(34761160-34761214)
[»] chr3 (4 HSPs)
chr3 (317-456)||(43073046-43073178)
chr3 (392-456)||(44656298-44656360)
chr3 (520-582)||(30174414-30174477)
chr3 (317-377)||(31525435-31525495)
[»] chr7 (4 HSPs)
chr7 (322-363)||(22197758-22197799)
chr7 (322-363)||(22240022-22240063)
chr7 (392-456)||(46691918-46691981)
chr7 (525-576)||(47762083-47762135)


Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 99 - 675
Target Start/End: Original strand, 41955666 - 41956225
Alignment:
Q  99 ttattagccaggttcaccatgcatgggtatattaactcccatcatttttaacccaaaagaaaaccaaataaataaaagcctatccattactcacgataat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41955666 ttattagccaggttcaccatgcatgggtatattaactcccatcatttttaacccaaaagaaaaccaaataaataaaagcttatccattactcacgataat 41955765  T
Q  199 attgatgattccatctatcttgtttgtcctacatgatttctttgtccagaatctaactttttacgtacggagacttggagtggatttaaggcagatataa 298  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  41955766 attgatgatttcatctatcttgtttgtcctacatgatttctttgtccagaatcttactttttacgtacggagacttggagtggatttaagacagatataa 41955865  T
Q  299 tactactannnnnnnnnnaa-tcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtggagnnnnnnnnctaaaatacaa 397  Q
    ||||||||          || |||  ||||||||||||| ||| || | |||||||||| |||||||||| |||  |||||        |||||||||||    
T  41955866 tactactattttttttttaattcgacaaaatattattaaccaacaaattcgtgcaagatacactaataagcttggatggag-aaaaaaactaaaatacaa 41955964  T
Q  398 ggaaaaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccacccaaaagcaacacccaaaatatataatactactatgtatctgt 497  Q
    ||  |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||             |||||||||||||||||||||||    
T  41955965 ggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaaaccacccaaaag-------------atataatactactatgtatctgt 41956051  T
Q  498 aatgactcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatgaaatgtgtgatttaa 597  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  41956052 aatgagtcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatgaaatgtgtgat---- 41956147  T
Q  598 ttaatttcttcctctattctctgattctagtccctctgctctatacttcttctttcttattgttacttcatcttctct 675  Q
     |||||||||| |||  |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  41956148 gtaatttcttcttcttctctctgattctagtccctatgctctattcttcttctttcttattgttacttcatcttctct 41956225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 460
Target Start/End: Original strand, 8463040 - 8463108
Alignment:
Q  392 atacaaggaaaaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccacccaaaa 460  Q
    |||||||| |||||||||||||| || |||  |||||||||||||||  || |||||||||||||||||    
T  8463040 atacaagggaaaatcggttgccacaaaaacgtcggctcgaacaaaaaccccttaaaaaaccacccaaaa 8463108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 26990733 - 26990673
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtgga 377  Q
    |||||| ||||||||||||| ||||||| |||||||||| ||||||||||| ||| |||||    
T  26990733 aatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtgga 26990673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 31833960 - 31833895
Alignment:
Q  389 aaaatacaaggaaaaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccaccc 456  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||  |||| |||||||||||    
T  31833960 aaaatacaagggaaaatcggttgccaca-taacaccggctcgaacaaaaa-ccccttaaaaaccaccc 31833895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 52935180 - 52935243
Alignment:
Q  525 tatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataggcatgaaatg 587  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||||||||    
T  52935180 tatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaatg 52935243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 52942815 - 52942878
Alignment:
Q  525 tatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataggcatgaaatg 587  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||||||||    
T  52942815 tatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaatg 52942878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 52946223 - 52946286
Alignment:
Q  525 tatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataggcatgaaatg 587  Q
    |||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||||||||    
T  52946223 tatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagtatgaaatg 52946286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 525 - 593
Target Start/End: Original strand, 18136444 - 18136514
Alignment:
Q  525 tatgggaaatagaaata-ggacccttataaataagag-aaaagtcaaggaaataggcatgaaatgtgtgat 593  Q
    |||||||||||| |||| ||||||||||||||| ||| ||||| |||||||||| ||||||||| ||||||    
T  18136444 tatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatgaaatatgtgat 18136514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 12173086 - 12173026
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtgga 377  Q
    |||||| ||||||||||||| ||| ||| |||||||||| ||||||||||| ||| |||||    
T  12173086 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtgga 12173026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 19472932 - 19472882
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataag 367  Q
    |||||| ||||||||||||| ||| ||| |||||||||| |||||||||||    
T  19472932 aatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataag 19472882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 28447851 - 28447793
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtg 375  Q
    |||||| ||||||||||||| ||| ||| |||||||||| |||||||||| || |||||    
T  28447851 aatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcgagtg 28447793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 42442015 - 42442057
Alignment:
Q  325 aaatattattaatcaataagtccgtgcaagatgcactaataag 367  Q
    |||||||||||| ||| |||||||||||||| |||||||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaataag 42442057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 576
Target Start/End: Complemental strand, 11398344 - 11398292
Alignment:
Q  525 tatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaata 576  Q
    ||||| |||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  11398344 tatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaata 11398292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 47028996 - 47028948
Alignment:
Q  390 aaatacaaggaaaaatcggttgccataataacaccggctcgaacaaaaa 438  Q
    ||||||||||  ||||||||||||  || ||||||||||||||||||||    
T  47028996 aaatacaaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaa 47028948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 493 - 585
Target Start/End: Complemental strand, 5373990 - 5373898
Alignment:
Q  493 tctgtaatgactcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatgaaa 585  Q
    |||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5373990 tctgtaataagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataagcatgaaa 5373898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 494 - 582
Target Start/End: Complemental strand, 17225347 - 17225259
Alignment:
Q  494 ctgtaatgactcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatg 582  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  17225347 ctgtaatgagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagccaaggaagtaagcatg 17225259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 15186981 - 15187041
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtgga 377  Q
    |||||| ||||||||||||| ||| ||| |||||||||||||||||||||| ||| |||||    
T  15186981 aatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtgga 15187041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 32183330 - 32183294
Alignment:
Q  402 aaatcggttgccataataacaccggctcgaacaaaaa 438  Q
    |||||||||||||||  ||||||||||||||||||||    
T  32183330 aaatcggttgccatacaaacaccggctcgaacaaaaa 32183294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 493 - 591
Target Start/End: Complemental strand, 20319636 - 20319538
Alignment:
Q  493 tctgtaatgactcaaagagcaatcaaggacaatatgggaaatagaaataggacccttataaataagagaaaagtcaaggaaataggcatgaaatgtgtg 591  Q
    |||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  20319636 tctgtaataagtcaaagagcaatcaggggcaatatgggaaatagaaataggacccttataaataagagaaaagtccaggaaataagcatgaaatatgtg 20319538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 42241589 - 42241639
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataag 367  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  42241589 aatcggcaaaatattattaaccaataagtccgggcaagatgcactaataag 42241639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 819136 - 819181
Alignment:
Q  324 aaaatattattaatcaataagtccgtgcaagatgcactaataagtt 369  Q
    ||||||||||||  ||||||||||||| |||| |||||||||||||    
T  819136 aaaatattattacccaataagtccgtgtaagaagcactaataagtt 819181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 324 - 460
Target Start/End: Complemental strand, 41419745 - 41419613
Alignment:
Q  324 aaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtggagnnnnnnnnctaaaatacaaggaaaaatcggttgccataataacac 423  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||| | | |||||            ||||||||||  ||||||||||||||||||||||    
T  41419745 aaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaac---aaatacaaggggaaatcggttgccataataacac 41419649  T
Q  424 cggctcgaacaaaaattccctaaaaaaccacccaaaa 460  Q
    || ||||||||||||  |||| |||||||||||||||    
T  41419648 cgactcgaacaaaaa-ccccttaaaaaccacccaaaa 41419613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 43356809 - 43356763
Alignment:
Q  323 taaaatattattaatcaataagtccgtgcaagatgcactaataagtt 369  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  43356809 taaagtattattaaccaataagtccgtgcaagatgcactaataagtt 43356763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 38908794 - 38908751
Alignment:
Q  324 aaaatattattaatcaataagtccgtgcaagatgcactaataag 367  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  38908794 aaaatattattaaccaataaggccgtgcaagatgcactaataag 38908751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 24200622 - 24200682
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtgga 377  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||    
T  24200622 aatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtgga 24200682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 5200482 - 5200598
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtggagnnnnnnnnctaaaatacaaggaaaaatcggttgccata 416  Q
    |||||| ||||||||||||| ||| ||||||||||||||  |||||||||||||| ||||||          || |||||||| |||||||||||||  |    
T  5200482 aatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaa-----aacatacaagggaaaatcggttgccgca 5200576  T
Q  417 ataacaccggctcgaacaaaaa 438  Q
      ||||||||||||||||||||    
T  5200577 caaacaccggctcgaacaaaaa 5200598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 22839386 - 22839334
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtt 369  Q
    |||||| ||||||||||||| ||| ||| |||||||||| |||||||||||||    
T  22839386 aatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagtt 22839334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 38086421 - 38086464
Alignment:
Q  324 aaaatattattaatcaataagtccgtgcaagatgcactaataag 367  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||    
T  38086421 aaaatattattaaccaataagcccgtgcaagacgcactaataag 38086464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 2319013 - 2319054
Alignment:
Q  330 ttattaatcaataagtccgtgcaagatgcactaataagtttg 371  Q
    ||||||| |||||| || ||||||||||||||||||||||||    
T  2319013 ttattaaccaataaatctgtgcaagatgcactaataagtttg 2319054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 6575857 - 6575805
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtt 369  Q
    |||||| ||||||||||||||||| ||| |||||||||| |||||||||||||    
T  6575857 aatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagtt 6575805  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 11546825 - 11546765
Alignment:
Q  396 aaggaaaaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccaccc 456  Q
    ||||| |||||||||| ||||  |||||||||||||||||||| ||| |||||||| ||||    
T  11546825 aaggagaaatcggttgtcatacaaacaccggctcgaacaaaaactccttaaaaaactaccc 11546765  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 456
Target Start/End: Complemental strand, 34761214 - 34761160
Alignment:
Q  402 aaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccaccc 456  Q
    |||||||||| ||||  ||||||| |||||||||||| ||| |||||||||||||    
T  34761214 aaatcggttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc 34761160  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 456
Target Start/End: Original strand, 43073046 - 43073178
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtggagnnnnnnnnctaaaatacaaggaaaaatcggttgccata 416  Q
    |||||| ||||||||||||| ||| ||| |||||||||||||||||||||| ||| |||||           | |||||||||  |||||||||||| ||    
T  43073046 aatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaa-----agaatacaaggggaaatcggttgcctta 43073140  T
Q  417 ataacaccggctcgaacaaaaattccctaaaaaaccaccc 456  Q
    | ||||||||||||||||||||  |||| |||||||||||    
T  43073141 a-aacaccggctcgaacaaaaa-ccccttaaaaaccaccc 43073178  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 44656298 - 44656360
Alignment:
Q  392 atacaaggaaaaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccaccc 456  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||| ||||| |||||||||||    
T  44656298 atacaagggaaaatcggttgccat-ataacacagactcgaacaaaaa-tcccttaaaaaccaccc 44656360  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 582
Target Start/End: Complemental strand, 30174477 - 30174414
Alignment:
Q  520 gacaatatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataggcatg 582  Q
    |||||||||||||  || |||| ||| |||||||||||||||||||| |||||||||| |||||    
T  30174477 gacaatatgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatg 30174414  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 31525495 - 31525435
Alignment:
Q  317 aatcggtaaaatattattaatcaataagtccgtgcaagatgcactaataagtttgagtgga 377  Q
    |||||| ||||||||||||| ||| ||| | |||||||| ||||||||||| ||| |||||    
T  31525495 aatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtgga 31525435  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 22197799 - 22197758
Alignment:
Q  322 gtaaaatattattaatcaataagtccgtgcaagatgcactaa 363  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||    
T  22197799 gtaaaatattattaaccaacaagtccgtgcaaggtgcactaa 22197758  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 22240022 - 22240063
Alignment:
Q  322 gtaaaatattattaatcaataagtccgtgcaagatgcactaa 363  Q
    ||||||||||||||| ||| ||||||||||||| ||||||||    
T  22240022 gtaaaatattattaaccaacaagtccgtgcaaggtgcactaa 22240063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 392 - 456
Target Start/End: Original strand, 46691918 - 46691981
Alignment:
Q  392 atacaaggaaaaatcggttgccataataacaccggctcgaacaaaaattccctaaaaaaccaccc 456  Q
    ||||||||  ||||||||||||| |  ||||||||||||||||||||  |||| |||||||||||    
T  46691918 atacaaggggaaatcggttgccacataaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 576
Target Start/End: Original strand, 47762083 - 47762135
Alignment:
Q  525 tatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaata 576  Q
    ||||| |||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  47762083 tatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaata 47762135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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