View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_41 (Length: 356)
Name: NF0598_low_41
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 42379035 - 42379286
Alignment:
| Q |
30 |
gttttgattatggaagatgggcactgagcagaggagtgagagatgggcagagagcaaagagatggatagaagaggaatgcgatataaattgtaccagtta |
129 |
Q |
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| T |
42379035 |
gttttgattatggaagatgggcactgagcagaggagtgagagatgggcggagagcaaagagatggatagaagaggaatgtgatataaattgtaccagtta |
42379134 |
T |
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| Q |
130 |
aatttgaattttggnnnnnnnn--cgagcaagtgagcagcttttccttttttgttataaagaatggtgccagagaaagagattggggttgattcaaaaca |
227 |
Q |
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| T |
42379135 |
aatttgaattttgaaaaaaaaaaacgagcaagtgagaagcttttccttttttgttataaagaatggtgccagagaaagagattggggttgattcaaaaca |
42379234 |
T |
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| Q |
228 |
tgtaaattagtacctctgaattaaaaactggtgatgtaatttagtgagtggc |
279 |
Q |
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| T |
42379235 |
tgtaaattagtacctctgaattaaaaactggtgatgtaatttagtgagtggc |
42379286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 42407749 - 42408000
Alignment:
| Q |
30 |
gttttgattatggaagatgggcactgagcagaggagtgagagatgggcagagagcaaagagatggatagaagaggaatgcgatataaattgtaccagtta |
129 |
Q |
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| T |
42407749 |
gttttgattatggaagatgggcactgagcagaggagtgagagatgggcggagagcaaagagatggatagaagaggaatgtgatataaattgtaccagtta |
42407848 |
T |
|
| Q |
130 |
aatttgaattttggnnnnnnnn--cgagcaagtgagcagcttttccttttttgttataaagaatggtgccagagaaagagattggggttgattcaaaaca |
227 |
Q |
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| T |
42407849 |
aatttgaattttgaaaaaaaaaaacgagcaagtgagaagcttttccttttttgttataaagaatggtgccagagaaagagattggggttgattcaaaaca |
42407948 |
T |
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| Q |
228 |
tgtaaattagtacctctgaattaaaaactggtgatgtaatttagtgagtggc |
279 |
Q |
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| T |
42407949 |
tgtaaattagtacctctgaattaaaaactggtgatgtaatttagtgagtggc |
42408000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 42379286 - 42379332
Alignment:
| Q |
301 |
cacctggagagaattttcatttgtgtgagctaaatgtgtatattatt |
347 |
Q |
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| T |
42379286 |
cacctggagagaattttcatttgtgtgagctaaatgtgtatattatt |
42379332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 42408000 - 42408046
Alignment:
| Q |
301 |
cacctggagagaattttcatttgtgtgagctaaatgtgtatattatt |
347 |
Q |
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| T |
42408000 |
cacctggagagaattttcatttgtgtgagctaaatgtgtatattatt |
42408046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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