View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0598_low_42 (Length: 347)
Name: NF0598_low_42
Description: NF0598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0598_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 72 - 337
Target Start/End: Complemental strand, 5568512 - 5568247
Alignment:
| Q |
72 |
caaacagcttatcctttgtcaccagccaaagtttcaaatgagcataaataattaggaaggttcaaatgttcatataaacatcctgtatttgtaggctgat |
171 |
Q |
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| T |
5568512 |
caaacagcttatcctttgtcaccagccaaagtttcaaatgagcataaataattaggaaggttcaaatgttcatataaacatcctgtatttgtaggctgat |
5568413 |
T |
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| Q |
172 |
tttaatttaattatcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaaagatcttttgacaataacatttccg |
271 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5568412 |
tttgatttaattatcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaattatcttttgacaataacatttccg |
5568313 |
T |
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| Q |
272 |
aatgccaaatcatagccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
337 |
Q |
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| T |
5568312 |
aatgccaaatcatagccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
5568247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 72 - 337
Target Start/End: Complemental strand, 5608235 - 5607967
Alignment:
| Q |
72 |
caaacagcttatcctttgtcaccagccaaagtttcaaatgagcataaataattaggaaggttcaaatgttcatataaacatcctgtatttgtaggctgat |
171 |
Q |
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| T |
5608235 |
caaacagcttatcctttgtcaccagccaaagtttcaaatgagcataaataattaggaaggttcaaatgttcatataaacatcctgtatttgtaggctgat |
5608136 |
T |
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| Q |
172 |
tttaatttaattatcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaaagatcttttgac---aataacattt |
268 |
Q |
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| T |
5608135 |
tttgatttaattatcattgaaactgcaacttcttcatgattgtctttatagctatgtatcaccttcattaatcaatgatcttttgacatgaataacattt |
5608036 |
T |
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| Q |
269 |
ccgaatgccaaatcatagccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
337 |
Q |
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| T |
5608035 |
ccgaatgccaaatcatagccaatcccttttctgaattatttccactaaatgctatttttccattctgtg |
5607967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 5561944 - 5561761
Alignment:
| Q |
152 |
tcctgtatttgtaggctgattttaatttaattatcattgaaactgcaaattcttcatgattgtctttattgctatgtatcaccttcattaatcaaagatc |
251 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5561944 |
tcctgtatttttaggctgattttgttttaattatgattga--ctgcaacttcttcgtgattgtctttattgctatgtatcaccttcattaatcaattatc |
5561847 |
T |
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| Q |
252 |
ttttgacaataacatttccgaatgccaaatcatagccaatcccttttctgaattatttccactagatgctatttttccattctgtg |
337 |
Q |
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| T |
5561846 |
ttttgacaattacatttcctaatgccaaatcatagccaatcctttttctgaattatttccactggatgctatttttccattctgtg |
5561761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 5549741 - 5549700
Alignment:
| Q |
74 |
aacagcttatcctttgtcaccagccaaagtttcaaatgagca |
115 |
Q |
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| T |
5549741 |
aacagcttctcctttgtcacctgtcaaagtttcaaatgagca |
5549700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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